View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8310_low_3 (Length: 321)
Name: NF8310_low_3
Description: NF8310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8310_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 38097308 - 38097431
Alignment:
| Q |
17 |
tgaatccagtgttggtagcctcggaaaagataattcatatgctacggtagaagatgtacgtgttcaaaattgcacattcaccggaacttcaaatggaggt |
116 |
Q |
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| T |
38097308 |
tgaatccagtgttggtagcctcggaaaagataattcatatgctacggtagaagatgtacgtgttcaaaattgcacattcaccggaacttcaaatggaggt |
38097407 |
T |
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| Q |
117 |
agaatcaagacatttgaggtaagg |
140 |
Q |
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| T |
38097408 |
agaatcaagacatttgaggtaagg |
38097431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 38097531 - 38097597
Alignment:
| Q |
237 |
agttgagttagacccaaattaaaaatagttctaaaaagagtatacatgttttgttatttgaattagg |
303 |
Q |
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| T |
38097531 |
agttgagttagaccaaatttaaaaatagttataagaatagtatatatgttttgttatttgaattagg |
38097597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 21551666 - 21551779
Alignment:
| Q |
17 |
tgaatccagtgttggtagcctcggaaaagataattcatatgctacggtagaagatgtacgtgttcaaaattgcacattcaccggaacttcaaatggaggt |
116 |
Q |
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| T |
21551666 |
tgaatcaagtgttggtagcctcggaaaaaatggagcattttccacggtagaacaagtatatgtaagaaattgcacattcacccgaacttcaaatggagct |
21551765 |
T |
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| Q |
117 |
agaatcaagacatt |
130 |
Q |
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| T |
21551766 |
agaatcaaaacatt |
21551779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 19056660 - 19056584
Alignment:
| Q |
53 |
atatgctacggtagaagatgtacgtgttcaaaattgcacattcaccggaacttcaaatggaggtagaatcaagacat |
129 |
Q |
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| T |
19056660 |
atatgctacagttgaagaggtacatgtaaaagattgcaccttcacgggaactacaaatggagcgagaatcaagacat |
19056584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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