View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8310_low_6 (Length: 270)

Name: NF8310_low_6
Description: NF8310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8310_low_6
NF8310_low_6
[»] chr1 (11 HSPs)
chr1 (29-148)||(3341571-3341691)
chr1 (29-97)||(3349842-3349910)
chr1 (31-85)||(3373161-3373215)
chr1 (36-144)||(3379217-3379325)
chr1 (32-104)||(4322600-4322672)
chr1 (45-97)||(9809673-9809725)
chr1 (29-104)||(4334490-4334565)
chr1 (35-104)||(3362181-3362250)
chr1 (29-97)||(2947970-2948038)
chr1 (29-93)||(9820455-9820519)
chr1 (32-104)||(2006923-2006995)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 3341571 - 3341691
Alignment:
Q  29 ctaaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttc-gttcatctacctcaaatacataacctattcatttgtgaagatt 127  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  3341571 ctaagagcaatcaaattggattgcatggatgctctagcaatttgctcaaatttttttgttcatctacctcaaatacataacctattcatttgtcaagatt 3341670  T
Q  128 ttttaaaggtataatgcccat 148  Q
    |||||||||||||||||||||    
T  3341671 ttttaaaggtataatgcccat 3341691  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 3349842 - 3349910
Alignment:
Q  29 ctaaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttcgttcatctacctc 97  Q
    ||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  3349842 ctaaaagcaatcaaggtagattgcatggattctctagcaatttgctcaaatttttcgatcatctacctc 3349910  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 3373161 - 3373215
Alignment:
Q  31 aaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttcg 85  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||||||||||    
T  3373161 aaaagcaatcaaagtaaattgcatggatgctctagcaatttgctcaaatttttcg 3373215  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 3379217 - 3379325
Alignment:
Q  36 caatcaaattagattgcatggatggtctagcaatttgctcaaatttttcgttcatctacctcaaatacataacctattcatttgtgaagattttttaaag 135  Q
    ||||||||  |||||||| ||| | ||||||||||||||||||||||||||||||| |||||| || || | ||||   ||| || |  |||||||||||    
T  3379217 caatcaaagaagattgcacggacgctctagcaatttgctcaaatttttcgttcatcgacctcacatgcagagcctagagattggtaattattttttaaag 3379316  T
Q  136 gtataatgc 144  Q
    |||||||||    
T  3379317 gtataatgc 3379325  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 4322672 - 4322600
Alignment:
Q  32 aaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttcgttcatctacctcaaataca 104  Q
    ||||||||| || ||||| || |||||| ||||||||||||||||||||||| | ||||| |||||| |||||    
T  4322672 aaagcaatccaagtagatcgcctggatgttctagcaatttgctcaaattttttgatcatcgacctcacataca 4322600  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 9809673 - 9809725
Alignment:
Q  45 tagattgcatggatggtctagcaatttgctcaaatttttcgttcatctacctc 97  Q
    ||||||||||||||  ||||||||||||| ||||||||||| |||||||||||    
T  9809673 tagattgcatggattctctagcaatttgcccaaatttttcgatcatctacctc 9809725  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 4334565 - 4334490
Alignment:
Q  29 ctaaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttcgttcatctacctcaaataca 104  Q
    |||| |||||||||| |||||  | |||||| || |||||||||||||||||||||| ||||| |||||| |||||    
T  4334565 ctaatagcaatcaaagtagatcccctggatgctccagcaatttgctcaaatttttcgatcatcgacctcacataca 4334490  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 3362181 - 3362250
Alignment:
Q  35 gcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttcgttcatctacctcaaataca 104  Q
    |||||| | ||| ||||| |||||| ||||||||||||||   ||||||||||||||||||||| |||||    
T  3362181 gcaatctagttaaattgcgtggatgctctagcaatttgcttcgatttttcgttcatctacctcacataca 3362250  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 2948038 - 2947970
Alignment:
Q  29 ctaaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttcgttcatctacctc 97  Q
    ||||||||||||||  ||||||||||||||  ||||||||||||  ||| ||||| | |||||||||||    
T  2948038 ctaaaagcaatcaaggtagattgcatggattctctagcaatttggccaatttttttgatcatctacctc 2947970  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 9820455 - 9820519
Alignment:
Q  29 ctaaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttcgttcatcta 93  Q
    ||||||| ||||||  ||||||||||||||  ||||||||||||  ||||||||||| |||||||    
T  9820455 ctaaaagtaatcaaggtagattgcatggattctctagcaatttgtccaaatttttcgatcatcta 9820519  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 2006923 - 2006995
Alignment:
Q  32 aaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttcgttcatctacctcaaataca 104  Q
    |||||||||||| ||||||||||||| |  | ||||| |||||||| ||||| | |||||||| ||| |||||    
T  2006923 aaagcaatcaaagtagattgcatggaagccccagcaacttgctcaatttttttgctcatctacatcacataca 2006995  T

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