View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8311_high_12 (Length: 223)

Name: NF8311_high_12
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8311_high_12
NF8311_high_12
[»] chr4 (8 HSPs)
chr4 (18-182)||(50136440-50136604)
chr4 (131-204)||(42096780-42096853)
chr4 (117-177)||(7095578-7095638)
chr4 (131-197)||(30211988-30212054)
chr4 (131-204)||(43635750-43635823)
chr4 (131-174)||(37182204-37182247)
chr4 (162-198)||(7095643-7095679)
chr4 (135-191)||(24254648-24254704)
[»] chr1 (6 HSPs)
chr1 (117-197)||(622859-622939)
chr1 (40-207)||(14210597-14210763)
chr1 (131-196)||(31847645-31847710)
chr1 (152-207)||(9978896-9978951)
chr1 (131-177)||(6960014-6960060)
chr1 (148-197)||(42784179-42784228)
[»] chr5 (4 HSPs)
chr5 (69-203)||(37442519-37442653)
chr5 (49-179)||(9828182-9828311)
chr5 (121-177)||(8254772-8254828)
chr5 (70-171)||(42158253-42158354)
[»] chr6 (6 HSPs)
chr6 (131-207)||(33699399-33699475)
chr6 (117-204)||(28992376-28992463)
chr6 (118-196)||(2904751-2904829)
chr6 (120-178)||(3788904-3788962)
chr6 (131-179)||(2146814-2146862)
chr6 (131-207)||(3606958-3607034)
[»] scaffold0004 (1 HSPs)
scaffold0004 (131-197)||(130690-130756)
[»] chr8 (3 HSPs)
chr8 (121-203)||(157490-157572)
chr8 (131-204)||(5995181-5995254)
chr8 (115-204)||(12750224-12750313)
[»] chr2 (5 HSPs)
chr2 (131-204)||(8514004-8514077)
chr2 (115-204)||(17794021-17794110)
chr2 (131-203)||(13387371-13387442)
chr2 (131-197)||(44069895-44069960)
chr2 (49-159)||(17793875-17793985)
[»] chr3 (7 HSPs)
chr3 (114-190)||(41361338-41361413)
chr3 (117-172)||(40890564-40890619)
chr3 (131-197)||(36703051-36703117)
chr3 (131-182)||(54788191-54788242)
chr3 (131-197)||(17647754-17647819)
chr3 (126-203)||(18360082-18360158)
chr3 (117-177)||(7238911-7238971)
[»] chr7 (2 HSPs)
chr7 (114-204)||(3557117-3557207)
chr7 (149-207)||(33818861-33818919)
[»] scaffold0254 (1 HSPs)
scaffold0254 (131-179)||(23275-23323)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 50136440 - 50136604
Alignment:
Q  18 ttctacttggacccttctataattgtatggcaattgttcttctcccattaatttttgttcattcccgccaaatagtcaagcgtaagttatcatgcatagg 117  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||  |||    
T  50136440 ttctacttggatccttctataattgtatgacaattgctcttctcccattaatttttgctcattcccgtcaaatagccgagcgtaagttatcatgcgcagg 50136539  T
Q  118 tgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggac 182  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50136540 tgtattttcagtttgagttaactcacataggtgtatttttcagtgtgagttaactcacgtaggac 50136604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 42096780 - 42096853
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatgg 204  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||| |||   ||||||| ||||||||||||    
T  42096780 tgagttaactcacataggtgcatttttcagcgtgagttaactcacgttggataggaatgagcaaaaatagatgg 42096853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 7095638 - 7095578
Alignment:
Q  117 gtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgt 177  Q
    ||||||||||| | | |||||||||||||| |||||||||||| |||||||||||||||||    
T  7095638 gtgtattttcaatgtaagttaactcacataagtgtatttttcagtgtgagttaactcacgt 7095578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 30211988 - 30212054
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaa 197  Q
    ||||||||||||| |||||| ||||| || ||||||||||||||||| ||| | |||||||||||||    
T  30211988 tgagttaactcacgtaggtgcattttccagtgtgagttaactcacgttggatgggaatgagaaaaaa 30212054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 43635823 - 43635750
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatgg 204  Q
    |||||||||| | ||||||||||||| ||  ||||||||||||| ||||||||  |||||| ||||||||||||    
T  43635823 tgagttaacttaaataggtgtattttccagcgtgagttaactcatgtaggacggaaatgagcaaaaatagatgg 43635750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 37182247 - 37182204
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactca 174  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||    
T  37182247 tgagttaactcacgtaggtgtatttttcaacttgagttaactca 37182204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 7095643 - 7095679
Alignment:
Q  162 gtgagttaactcacgtaggacgagaatgagaaaaaat 198  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  7095643 gtgagttaactcacgtaggatgagaatgagcaaaaat 7095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 24254704 - 24254648
Alignment:
Q  135 ttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgag 191  Q
    ||||||||| ||| || ||||||||| ||||||||| | |||| |||||||||||||    
T  24254704 ttaactcacgtagatgcatttttcaacgtgagttaatttacgttggacgagaatgag 24254648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 622939 - 622859
Alignment:
Q  117 gtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaa 197  Q
    ||||||||||||  ||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  622939 gtgtattttcagcgtgagttaactcacgtaggtgtatttttcaacgtgagttaactcacgtaggacgggaatgagcaaaaa 622859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 14210597 - 14210763
Alignment:
Q  40 ttgtatggcaattgttcttctcccattaatttttgttcattcccgccaaatagtcaagcgtaagttatcatgcataggtgtattttcagtttgagttaac 139  Q
    |||||||  ||||| |||||||||||  ||||| | ||||||||| ||||||||| || || ||||| ||  |  || || |||||||   |||||||||    
T  14210597 ttgtatgataattgatcttctcccatctatttt-gctcattcccgtcaaatagtcgagtgtgagttaacaaacgcagatgcattttcaacgtgagttaac 14210695  T
Q  140 tcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatggaag 207  Q
    ||||||||||||||||||||  |||||||| |||||||| || | ||||||| |||||||||||||||    
T  14210696 tcacataggtgtatttttcagcgtgagttatctcacgtaagatgggaatgagcaaaaatagatggaag 14210763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 31847710 - 31847645
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaa 196  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| || |||||| |||||| ||||    
T  31847710 tgagttaactcacatagatgtatttttcactgtgagttaactcatgttggacgaaaatgagtaaaa 31847645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 9978896 - 9978951
Alignment:
Q  152 atttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatggaag 207  Q
    |||||||| ||||||||||||||||||| | | ||||||| ||||||| |||||||    
T  9978896 atttttcagtgtgagttaactcacgtagtatgggaatgagcaaaaataaatggaag 9978951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 6960060 - 6960014
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgt 177  Q
    |||||||||| || ||||||||||||||| |||||||||||| ||||    
T  6960060 tgagttaacttacgtaggtgtatttttcagtgtgagttaacttacgt 6960014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 42784228 - 42784179
Alignment:
Q  148 gtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaa 197  Q
    |||||||||||| ||||| ||||||||||| | ||| |||||||||||||    
T  42784228 gtgtatttttcagtgtgaattaactcacgttgaacgtgaatgagaaaaaa 42784179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 37442653 - 37442519
Alignment:
Q  69 tttttgttcattcccgccaaatagtcaagcgtaagtta--tcatgcataggtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgag 166  Q
    |||||| ||||||||| ||||||| | ||||| |||||  ||||||| |  ||||||||||   ||||||||||||| |||||||||||||||  |||||    
T  37442653 tttttgctcattcccgtcaaatagccgagcgtgagttaactcatgcaga--tgtattttcaacatgagttaactcacgtaggtgtatttttcagcgtgag 37442556  T
Q  167 ttaactcacgtaggacgagaatgagaaaaaatagatg 203  Q
    |||||||| |||||||| ||||||| ||||| |||||    
T  37442555 ttaactcatgtaggacgggaatgagcaaaaacagatg 37442519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 9828182 - 9828311
Alignment:
Q  49 aattgttcttctcccattaatttttgttcattcccgccaaatagtcaagcgtaagttatcatgcataggtgtattttcagtttgagttaactcacatagg 148  Q
    ||||| |||||||||||    ||||| ||||||||| ||||||||  ||||| ||||| |   || | |||||||||||| | |||||||||||| ||||    
T  9828182 aattgctcttctcccatctggttttgctcattcccgtcaaatagtagagcgtgagttaacccacacaagtgtattttcagat-gagttaactcacgtagg 9828280  T
Q  149 tgtatttttcaatgtgagttaactcacgtag 179  Q
    |||||||||||  ||||||||| ||||||||    
T  9828281 tgtatttttcagcgtgagttaaatcacgtag 9828311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 8254772 - 8254828
Alignment:
Q  121 attttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgt 177  Q
    ||||||||| ||||||||||||||||  || ||||||||  ||||||||||||||||    
T  8254772 attttcagtgtgagttaactcacatatatgcatttttcagcgtgagttaactcacgt 8254828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 42158253 - 42158354
Alignment:
Q  70 ttttgttcattcccgccaaatagtcaagcgtaagttatc--atgcataggtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagt 167  Q
    ||||| |||||| || ||||||||| || || |||||||  ||||||  ||||||||| | | |||||||||||| |||  |||||||||||| ||||||    
T  42158253 ttttgctcattctcgtcaaatagtcgagtgtgagttatctcatgcat--gtgtatttttaatgtgagttaactcaaataaatgtatttttcaacgtgagt 42158350  T
Q  168 taac 171  Q
    ||||    
T  42158351 taac 42158354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 33699399 - 33699475
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatggaag 207  Q
    ||||||||||||| |||||| ||||||||| || ||||||||  ||| ||||||||||||| ||||| |||||||||    
T  33699399 tgagttaactcacgtaggtgaatttttcaacgtaagttaacttgcgttggacgagaatgagcaaaaacagatggaag 33699475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 28992463 - 28992376
Alignment:
Q  117 gtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatgg 204  Q
    ||||||||||||  ||||||||||||| || ||||||||||||  ||||||||||||||||||   | ||||||| ||||| ||||||    
T  28992463 gtgtattttcagcgtgagttaactcacgtatgtgtatttttcagcgtgagttaactcacgtagagagggaatgagtaaaaacagatgg 28992376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 2904751 - 2904829
Alignment:
Q  118 tgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaa 196  Q
    ||||||||||   ||||||||||||| ||||||||||||||   |||||||||||||||| ||| ||||||||| ||||    
T  2904751 tgtattttcaacgtgagttaactcacgtaggtgtatttttctgcgtgagttaactcacgttggaagagaatgagcaaaa 2904829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 3788962 - 3788904
Alignment:
Q  120 tattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgta 178  Q
    |||||||||| |||||||||| || ||||||||||||| |||||||||||  |||||||    
T  3788962 tattttcagtgtgagttaacttacgtaggtgtattttttaatgtgagttaggtcacgta 3788904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 2146814 - 2146862
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtag 179  Q
    |||||||||| || ||||||| |||||||| |||| |||||||||||||    
T  2146814 tgagttaacttacgtaggtgtgtttttcaacgtgaattaactcacgtag 2146862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 3607034 - 3606958
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatggaag 207  Q
    ||||||||||||| |||||||||||| ||  || |||||||||| ||||   |  |||||| |||||||||||||||    
T  3607034 tgagttaactcacgtaggtgtattttccagcgtaagttaactcatgtagagtggaaatgagcaaaaatagatggaag 3606958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 130756 - 130690
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaa 197  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| ||||  |||||| |||||    
T  130756 tgagttaactcacgcaggtgtatttttcagtgtgagttaactcacgtaagacggaaatgagtaaaaa 130690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 157572 - 157490
Alignment:
Q  121 attttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatg 203  Q
    ||||||| | |||||||| |||| |||||||||||||||  ||||||||||||||||  || | ||||||| |||||||||||    
T  157572 attttcaatatgagttaattcacgtaggtgtatttttcagcgtgagttaactcacgttagatgggaatgagcaaaaatagatg 157490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 5995181 - 5995254
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatgg 204  Q
    ||||||||||| |||| ||||||||||||  |||||||||||||||| | ||  ||||||| ||||| ||||||    
T  5995181 tgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgttgaacatgaatgagcaaaaaaagatgg 5995254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 12750224 - 12750313
Alignment:
Q  115 aggtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatgg 204  Q
    |||||||||||||||  || |||||| || || | ||||||||||   ||||||||||||||||||  | ||||||| ||||| ||||||    
T  12750224 aggtgtattttcagtgcgaattaacttacgtaagcgtatttttcagcttgagttaactcacgtagggtgggaatgagcaaaaacagatgg 12750313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 8514004 - 8514077
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatgg 204  Q
    ||||||||||||| |||||||||||||||| || | ||||||||||||| |||  |||||| ||||| ||||||    
T  8514004 tgagttaactcacgtaggtgtatttttcaacgtaatttaactcacgtagtacggaaatgagcaaaaacagatgg 8514077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 17794021 - 17794110
Alignment:
Q  115 aggtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatgg 204  Q
    ||||||||||||||  |||||||||| | ||||||||||||||||  || |||||||| || ||||| |||||||||  |||| ||||||    
T  17794021 aggtgtattttcagcgtgagttaacttatataggtgtatttttcagcgtaagttaactaacataggatgagaatgagtgaaaacagatgg 17794110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 13387371 - 13387442
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatg 203  Q
    ||||||||||||| || ||||||||| ||   ||||||||||||||||||||||||||||  |||||||||||    
T  13387371 tgagttaactcacgtatgtgtatttt-catcatgagttaactcacgtaggacgagaatgaacaaaaatagatg 13387442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 44069895 - 44069960
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaa 197  Q
    |||||||||||||  ||||||||||| ||| |||||||||||||||||||| |  ||||||||||||    
T  44069895 tgagttaactcacgcaggtgtatttt-caacgtgagttaactcacgtaggatggaaatgagaaaaaa 44069960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 17793875 - 17793985
Alignment:
Q  49 aattgttcttctcccattaatttttgttcattcccgccaaatagtcaagcgtaagttatcatgcataggtgtattttcagtttgagttaactcacatagg 148  Q
    |||||||||||| ||||   ||||| |||||| |||  |||||||| ||||||||||| |    ||| ||||||||| ||  |||||||||| | |||||    
T  17793875 aattgttcttcttccatatgtttttattcatttccgttaaatagtcgagcgtaagttaactcatatatgtgtattttaagcgtgagttaacttatatagg 17793974  T
Q  149 tgtatttttca 159  Q
    |||||||||||    
T  17793975 tgtatttttca 17793985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 41361338 - 41361413
Alignment:
Q  114 taggtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatga 190  Q
    |||||||||||||| | ||| |||||||||||||||| | ||||||| | |||||||||||| ||||||| ||||||    
T  41361338 taggtgtattttcaatgtgaattaactcacataggtgca-ttttcaacgcgagttaactcacataggacgggaatga 41361413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 40890564 - 40890619
Alignment:
Q  117 gtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaact 172  Q
    |||||||||||   ||| |||||||||||| |||||||||||||||||||||||||    
T  40890564 gtgtattttcaacatgaattaactcacatatgtgtatttttcaatgtgagttaact 40890619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 36703117 - 36703051
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaa 197  Q
    |||||||| |||| |||||||||| ||||  |||| ||||||||||||||||| ||||||| |||||    
T  36703117 tgagttaattcacgtaggtgtattcttcagcgtgaattaactcacgtaggacgggaatgagcaaaaa 36703051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 54788191 - 54788242
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggac 182  Q
    |||||||| ||||||||||| ||||||||| ||||||||||| |||| ||||    
T  54788191 tgagttaattcacataggtgcatttttcaacgtgagttaacttacgttggac 54788242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 17647754 - 17647819
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaa 197  Q
    ||||||||||||| |||||| ||||| ||| |||| ||||||||||||  ||||||||||| |||||    
T  17647754 tgagttaactcacgtaggtgcatttt-caacgtgatttaactcacgtaacacgagaatgagcaaaaa 17647819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 18360158 - 18360082
Alignment:
Q  126 cagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatg 203  Q
    |||| |||||||||||||  ||||||||||| ||  ||||||||||| |||||  ||||||||||| ||||| |||||    
T  18360158 cagtgtgagttaactcacgcaggtgtatttt-cagcgtgagttaacttacgtaaaacgagaatgagcaaaaacagatg 18360082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 7238971 - 7238911
Alignment:
Q  117 gtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgt 177  Q
    |||||||||||   |||||||| |||| |||||| ||||||||| ||||||||| ||||||    
T  7238971 gtgtattttcaacatgagttaagtcacgtaggtgcatttttcaacgtgagttaaatcacgt 7238911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 3557207 - 3557117
Alignment:
Q  114 taggtgtattttcagtttgagttaactcacataggtgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatgg 204  Q
    ||||||||||||||   ||||||| ||||| |||||| ||||||||  |||||||||||||||||| |||  ||| || ||||||| ||||    
T  3557207 taggtgtattttcaaggtgagttagctcacgtaggtgcatttttcagcgtgagttaactcacgtagcacggtaataagcaaaaataaatgg 3557117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 33818919 - 33818861
Alignment:
Q  149 tgtatttttcaatgtgagttaactcacgtaggacgagaatgagaaaaaatagatggaag 207  Q
    |||||||||||  |||||||||||||||||||||| || ||  |||||| |||||||||    
T  33818919 tgtatttttcagcgtgagttaactcacgtaggacgggagtggaaaaaaacagatggaag 33818861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 23275 - 23323
Alignment:
Q  131 tgagttaactcacataggtgtatttttcaatgtgagttaactcacgtag 179  Q
    |||||||||| || ||||||| |||||||| |||| |||||||||||||    
T  23275 tgagttaacttacgtaggtgtgtttttcaacgtgaattaactcacgtag 23323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University