View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_high_5 (Length: 362)
Name: NF8311_high_5
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 23156221 - 23156488
Alignment:
| Q |
19 |
tttctaccatttatagaattttgaaaaatttaacttcctaaattaaaatcattacaaaatgtctcttaaataaattgaagtgttgtgtttgcccctttta |
118 |
Q |
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| T |
23156221 |
tttctaccatttatagaattttgaaacattaaacttcctaaattaaaatcattacaaaatggctcttaaataaattgaagtgttgtgtttgcccctttta |
23156320 |
T |
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| Q |
119 |
cacacttgtatagacgtcacataaaaaattctcaaat---ataagnnnnnnnnnnaacctttcatgatagaaaaaggtaaatcccaaatgtttttaatag |
215 |
Q |
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| T |
23156321 |
cacacttgtataaacgtcacataaaaaattcccaaatgtaagaagttttttttttaacctttcatgatagaaaaaggtaaatcccaaatgtttttaatag |
23156420 |
T |
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| Q |
216 |
caaatgtatttttattttattttcaatagcaagtgtgtctttattt-gtgcaatttataatttgatat |
282 |
Q |
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| T |
23156421 |
caagtgtatttttattttatttttaatagcaagtgtctctttatttcttgcaatttataatttgatat |
23156488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 19281317 - 19281390
Alignment:
| Q |
74 |
aaaatgtctcttaaataaattgaagtgttgtgtttgccccttttacacactt-gtatagacgtcacataaaaaa |
146 |
Q |
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| T |
19281317 |
aaaatgtctcttaactacattgaagtgttgtgtgtgtctctttaacacacttagtaaggaggtcacataaaaaa |
19281390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 27595479 - 27595439
Alignment:
| Q |
265 |
caatttataatttgatatctaaaaattgttgattaggttaa |
305 |
Q |
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| T |
27595479 |
caatttataatttgatatatgataattgttgattaggttaa |
27595439 |
T |
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