View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_high_8 (Length: 316)
Name: NF8311_high_8
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_high_8 |
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| [»] scaffold1407 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 15933120 - 15932827
Alignment:
| Q |
1 |
gacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15933120 |
gacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggc |
15933021 |
T |
|
| Q |
101 |
ttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15933020 |
ttgagttatagcaaggtaggtagcaacatggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaa |
15932921 |
T |
|
| Q |
201 |
ttgaaatagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaattacgataag |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932920 |
ttgaaatagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataag |
15932827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 15941462 - 15941169
Alignment:
| Q |
1 |
gacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941462 |
gacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggc |
15941363 |
T |
|
| Q |
101 |
ttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15941362 |
ttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaagttggaatgaaaaaggaatgatgaaaacaggaactagcaa |
15941263 |
T |
|
| Q |
201 |
ttgaaatagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaattacgataag |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941262 |
ttgaaatagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataag |
15941169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 34657552 - 34657259
Alignment:
| Q |
1 |
gacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34657552 |
gacggtgcagccaggaatttgaagaaatacacacagcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggc |
34657453 |
T |
|
| Q |
101 |
ttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34657452 |
ttgagttaaagcaaggtaggtagcaacacggcaattggaaaatacggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagaaa |
34657353 |
T |
|
| Q |
201 |
ttgaaatagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaattacgataag |
294 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34657352 |
ttgaaatagtaacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataag |
34657259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 11164558 - 11164265
Alignment:
| Q |
1 |
gacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaatatagactcacggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
11164558 |
gacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacacaacaatatagactcatggc |
11164459 |
T |
|
| Q |
101 |
ttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagcaa |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11164458 |
ttgagttaaagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaacaggaactagaaa |
11164359 |
T |
|
| Q |
201 |
ttgaaatagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaattacgataag |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11164358 |
ttgaaatagttacttaattcaaaattgcaattaagaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataag |
11164265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 1239 - 1307
Alignment:
| Q |
221 |
aaaattgcaattaacaaaggttctgaatttgtaa-aattgtacgatagctaaacaaaagcttaaattac |
288 |
Q |
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|||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
1239 |
aaaattgcaattcacaaaggttctgaagttgtaagaattgtatgatagctaaacaaaagcttgaattac |
1307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 32609 - 32557
Alignment:
| Q |
221 |
aaaattgcaattaacaaaggttctgaatttgtaa-aattgtacgatagctaaa |
272 |
Q |
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|||||||||||| |||||| ||||||| |||||| ||||||||||||||||| |
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| T |
32609 |
aaaattgcaattcacaaagattctgaagttgtaaggattgtacgatagctaaa |
32557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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