View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_low_1 (Length: 515)
Name: NF8311_low_1
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 45981268 - 45980785
Alignment:
| Q |
16 |
gacatcatgatataggtgaaacatagaccaaacttttgcacttgctaaggaaaccgctaatgtgcatgtttcagtccttgccatttgtgcatacacttat |
115 |
Q |
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| T |
45981268 |
gacatcatgatataggtgaaacatagaccaaacttttgcacttgctaaggaaaccgttaatgtgcatgtttcagtccttgccagttgtgcatacacttat |
45981169 |
T |
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| Q |
116 |
caatagtctaagtcaagtctttgaataaatcttcttgcaatcagtacatgatgattaacttatcttgcatttgcagctttgcatacttannnnnnnagta |
215 |
Q |
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| T |
45981168 |
caatagtctaagtcaagtctttgaagaaatcttcttgcaatcagcacatgatgattaacttatcttgcatttgcagctttgcatacttatatttttagta |
45981069 |
T |
|
| Q |
216 |
catgatgatttattggttaaagaaagtaaaccaaggccttaatactggtaaccatactatcactcataaacctcttggttctagcaccactaaaataaag |
315 |
Q |
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| T |
45981068 |
catgatgatttattggttaaagaaagtaaaccaaggccttaatactggtaaccatactatcactcataaacctcttggttctagcaccactaaaataaag |
45980969 |
T |
|
| Q |
316 |
taaaatttgcgtaaaacaacaccctagatatttaatataagtccaacgatgtataagatcaagtgtaaatgacaaagaactaacaactcaacattaatta |
415 |
Q |
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| T |
45980968 |
taaaatttgcgaaaaacaacaccctagatatttaatataagtccaacgatgtataagatcaagtgtaaatgacaaagaactaacaactcaacattaatta |
45980869 |
T |
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| Q |
416 |
acttaagaacctcaatacaatctacaaagtgattatacaacacaaagaccaatgaacagtgaccatgctcacttgagatcaaac |
499 |
Q |
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| T |
45980868 |
acttaagaacctcaatacaatctacaaagtgattatacaacacaaagaccaatgagtagtgaccatgctcacttgagatcaaac |
45980785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 45991912 - 45991840
Alignment:
| Q |
37 |
catagaccaaacttttgcacttgctaaggaaaccgctaatgtgcatgtttcagtccttgccatttgtgcatac |
109 |
Q |
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|||||||||| || ||||||||||||||||| || ||| ||||||||||||||||||||||| ||| |||| |
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| T |
45991912 |
catagaccaacctcttgcacttgctaaggaacccactagcctgcatgtttcagtccttgccattggtgtatac |
45991840 |
T |
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