View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8311_low_11 (Length: 263)
Name: NF8311_low_11
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 55 - 250
Target Start/End: Complemental strand, 50135105 - 50134909
Alignment:
| Q |
55 |
ttagtctcgaatataaataaaagtcgagtcaataaaaatgaatgtatttatttcaatttttggaccaaatacataaactttggttgattcaaattttgct |
154 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
50135105 |
ttagtctcgaatataaacaaaagtcgagtcaacaaaaatgaatgtatttatttcaacttttggactaaatacataaactttggttgattcaatttttgct |
50135006 |
T |
|
| Q |
155 |
tatatttgagaccgacaaaaatacttttcttgagggggg-ttatgatgtcgtggtcattattgattattcatatcatcctcaaaactgatgtgatgt |
250 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50135005 |
tatatttgagaccgacaaaagtacttttcttgaggggggactatgatgtcgtggtcattattgattattcatatcatcctcaaaactgatgtgatgt |
50134909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 50135995 - 50135958
Alignment:
| Q |
6 |
tgcaattatcatcttttcttattcccattttctttctt |
43 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50135995 |
tgcaattatcatcttttcttatttccattttctttctt |
50135958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 25809292 - 25809394
Alignment:
| Q |
64 |
aatataaataaaagtcgagtcaataaaaatgaatgtatttatttcaatttttggaccaaatacataaactttggttgattcaaattttgcttatatttga |
163 |
Q |
| |
|
|||||||| |||| | |||||| |||||| ||||||||| ||||| ||||||||||||||||| |||||| ||||| ||| ||||| |||||||||| |
|
|
| T |
25809292 |
aatataaacaaaaattaagtcaacaaaaatagatgtatttaattcaacttttggaccaaatacattaacttttgttgacccaacttttgtttatatttga |
25809391 |
T |
|
| Q |
164 |
gac |
166 |
Q |
| |
|
||| |
|
|
| T |
25809392 |
gac |
25809394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University