View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_low_14 (Length: 239)
Name: NF8311_low_14
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_low_14 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 29965203 - 29965424
Alignment:
| Q |
18 |
aaatgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggt |
117 |
Q |
| |
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|||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29965203 |
aaatatttggttagaaaacgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacagcaatttgaatctataccatttggt |
29965302 |
T |
|
| Q |
118 |
tcaggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29965303 |
tcaggtcgtagacgttgtcctgggattcaattgggtttggttacggttagatttgttgtagctcaattggtgcattgctttaattgggaacttccacata |
29965402 |
T |
|
| Q |
218 |
atattagcccttccgatttgaa |
239 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
29965403 |
atattagcccttccaatttgaa |
29965424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 30009595 - 30009374
Alignment:
| Q |
18 |
aaatgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggt |
117 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30009595 |
aaatatttggttagaaaacgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacagcaatttgaatctataccatttggt |
30009496 |
T |
|
| Q |
118 |
tcaggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30009495 |
tcaggtcgtagacgttgtcctgggattcaattgggtttggttacggttagatttgttgtagctcaattggtgcattgctttaattgggaacttccacata |
30009396 |
T |
|
| Q |
218 |
atattagcccttccgatttgaa |
239 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
30009395 |
atattagcccttccaatttgaa |
30009374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 30007487 - 30007704
Alignment:
| Q |
22 |
gtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttcag |
121 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||| | |
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| T |
30007487 |
gtttggtcagaaaatgctgatgaattttacccagagagatttattgacaagaaaatgaattatcaaggacatgagtttgaatctataccatttggttctg |
30007586 |
T |
|
| Q |
122 |
gtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacataatat |
221 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||| |||| || ||| |||||||||| ||||||| |||||| |||||||||||||||||||| |
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|
| T |
30007587 |
gtcgtaggcgttgtcctggaattcaattgggtttaattatcgttaagttggttatagctcaatttgtgcattgctttaactgggaacttccacataatat |
30007686 |
T |
|
| Q |
222 |
tagcccttccgatttgaa |
239 |
Q |
| |
|
||| |||||| ||||||| |
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| T |
30007687 |
tagtccttccaatttgaa |
30007704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 30001369 - 30001588
Alignment:
| Q |
20 |
atgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttc |
119 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||||||| ||| || ||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
30001369 |
atgtttggtcagaaaatgctgaagaattttacccagagagatttattgagaaaaaaatgaattatctcggacaagagtttgaatctataccatttggttc |
30001468 |
T |
|
| Q |
120 |
aggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacataat |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || |||| |||| || ||| |||||||||| ||||||| |||||| |||||||||||||||||| |
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| T |
30001469 |
tggtcgtagacgttgtcctggaattcaattgggtatgattacggttaagttggttatagctcaattcgtgcattgctttaactgggaacttccacataat |
30001568 |
T |
|
| Q |
220 |
attagcccttccgatttgaa |
239 |
Q |
| |
|
||||| |||||| ||||||| |
|
|
| T |
30001569 |
attagtccttccaatttgaa |
30001588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 29995695 - 29995899
Alignment:
| Q |
19 |
aatgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggtt |
118 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||||| ||| || ||| ||||||||| |||||||| |||||||||||||||||||||| |
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| T |
29995695 |
aatgtttggtcagaaaatgccgaagaattttatccagagagatttattgagaa-aaactgaattatctcggacaagagtttgaatctataccatttggtt |
29995793 |
T |
|
| Q |
119 |
caggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacataa |
218 |
Q |
| |
|
| ||||||| ||||||||||| |||||||||||||| |||| ||| || ||| |||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
29995794 |
ctagtcgtaggcgttgtcctggaattcaattgggtttaattacgattaagttggttatagctcaatttgtgcattgctttaattgggaacttccacataa |
29995893 |
T |
|
| Q |
219 |
tattag |
224 |
Q |
| |
|
|||||| |
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|
| T |
29995894 |
tattag |
29995899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 30068031 - 30067826
Alignment:
| Q |
19 |
aatgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||||||| ||| |||||||||||||||||| ||||||| |||||| | ||||||||| || |
|
|
| T |
30068031 |
aatgtttggtcagaaaatgctgaagaattttatccaaagagatttattgaaaagaaaatgaattatcaaagacaagagtttgaaagtttaccatttgatt |
30067932 |
T |
|
| Q |
119 |
caggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacataa |
218 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||||| || ||| |||||||||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
30067931 |
atggtcgtagacgttgccctggaattcaattgggtttaactactgttaagttggttatagctcaatttgtgcattgctttaattgggaactttcacataa |
30067832 |
T |
|
| Q |
219 |
tattag |
224 |
Q |
| |
|
|||||| |
|
|
| T |
30067831 |
tattag |
30067826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 30043514 - 30043294
Alignment:
| Q |
19 |
aatgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggtt |
118 |
Q |
| |
|
||||||||||||||||||||| | || ||||| |||||||||||| || || ||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
30043514 |
aatgtttggtcagaaaatgctaaagaattttacccagagagatttgtagagaaaaaaatgaattatcttggacaagagtttgaatctataccatttggtt |
30043415 |
T |
|
| Q |
119 |
caggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacataa |
218 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||| ||||||||| ||| ||| |||||||||| | |||| ||||| ||||||||||||||||| |
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|
| T |
30043414 |
ctggtcgtaggcgttgtcctggaattcaattgggtttaattactgttaaattggttatagctcaatttatccattgttttaactgggaacttccacataa |
30043315 |
T |
|
| Q |
219 |
tattagcccttccgatttgaa |
239 |
Q |
| |
|
|||||| || ||| ||||||| |
|
|
| T |
30043314 |
tattagtccctccaatttgaa |
30043294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 29953935 - 29954156
Alignment:
| Q |
18 |
aaatgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggt |
117 |
Q |
| |
|
||||||||||||||||||||| || || ||||| ||||||||||| | || |||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
29953935 |
aaatgtttggtcagaaaatgccgaagaattttacccagagagattcattggcaagaaaatgaattatcaaggacaagagtttgaatctctaccatttggt |
29954034 |
T |
|
| Q |
118 |
tcaggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacata |
217 |
Q |
| |
|
|| || || |||||||||||||| ||||||| |||||| || || |||| || ||| | || ||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
29954035 |
tctggccgcagacgttgtcctggaattcaatcgggtttagtgaccgttaagttggttattgcccaattggtgcattgttttgattgggaacttccatata |
29954134 |
T |
|
| Q |
218 |
atattagcccttccgatttgaa |
239 |
Q |
| |
|
|||| || |||||| ||||||| |
|
|
| T |
29954135 |
atatcagtccttccaatttgaa |
29954156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 29946977 - 29947195
Alignment:
| Q |
21 |
tgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttca |
120 |
Q |
| |
|
|||||||||||||||| ||| || ||| ||||||| ||||||| ||| | ||||||||||||| ||||||| | ||| ||||||||||||||||||| |
|
|
| T |
29946977 |
tgtttggtcagaaaattatgaagaatttcatccagaaagatttattgacatgaaaatgaattatgaaggacataagtttaaatctataccatttggttct |
29947076 |
T |
|
| Q |
121 |
ggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacataata |
220 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||| | || ||| | | ||| ||||||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
29947077 |
ggtcgtagacgttgtcctggaattgaaatgggtttgatcacaattaaaatggttatagctcaattggtacattgctttaattgggaacttccatgtaata |
29947176 |
T |
|
| Q |
221 |
ttagcccttccgatttgaa |
239 |
Q |
| |
|
|||| |||||| ||||||| |
|
|
| T |
29947177 |
ttagtccttccaatttgaa |
29947195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 29945003 - 29945223
Alignment:
| Q |
19 |
aatgtttggtcagaaaatgctgatgagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||||| |||| | |||||||| |||||||| |||||||||| |||||| |||||||||||| | |
|
|
| T |
29945003 |
aatgtttggtcagaaaatgctgaagaattttgtccagagaggtttattaataagaaattgaattatgaaggacaagagtttgaaagtataccatttggat |
29945102 |
T |
|
| Q |
119 |
caggtcgtagacgttgtcctgggattcaattgggtttggttactgttagatttgttgtagctcaattggtgcattcctttaattgggaacttccacataa |
218 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||| |||| |||||||| || |||||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
29945103 |
ttggtcgtaggcgttgccctggaattcaattggctttgaggactgttaggttaagcatagctcaattggtgcattgctttaattggaaacttccatataa |
29945202 |
T |
|
| Q |
219 |
tattagcccttccgatttgaa |
239 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
29945203 |
tattagtccttctaatttgaa |
29945223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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