View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_low_15 (Length: 239)
Name: NF8311_low_15
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 5249153 - 5249287
Alignment:
| Q |
1 |
tatataaaaagaaatgatgaatatttgttgtcttgttttgaaaggtaaaacgccaaacactgaagcctatagaaggggaacagtgagtgagtgtgagagg |
100 |
Q |
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| T |
5249153 |
tatataaaaagaaatgatgaatatttgttgtcttgttttgaaaggtaaaacgccaaacactgaagcctatagaaggggaacagtgagtgagtgtgagagg |
5249252 |
T |
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| Q |
101 |
cgccgtcaaccaattagaagcaaaggttgtgtgtc |
135 |
Q |
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| T |
5249253 |
cgccgtcaaccaattagaagcaaaggttgtgtgtc |
5249287 |
T |
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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 5249316 - 5249375
Alignment:
| Q |
164 |
caggtttcccgtttcactaaagtcttataatttataatataaagtttacaaaatgcataa |
223 |
Q |
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| T |
5249316 |
caggtttcccgtttcactaaagtcttataatttataatataaagtttacaaaatgcataa |
5249375 |
T |
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