View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_low_4 (Length: 399)
Name: NF8311_low_4
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_low_4 |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 219 - 399
Target Start/End: Complemental strand, 23924437 - 23924257
Alignment:
| Q |
219 |
aaactaaacacaaaatatatagttgtgtctttgaagcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagtt |
318 |
Q |
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| T |
23924437 |
aaactaaacacaaaatatatagttgtgtctttgaagcatattgaggatccagtccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagtt |
23924338 |
T |
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| Q |
319 |
gttcatctctatctttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatagtt |
399 |
Q |
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| T |
23924337 |
gttcatctctatttttagccttttcagctgaagtagaaaagctagaagaagacttgtagtgttatacctgtttaaatagtt |
23924257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 23924613 - 23924456
Alignment:
| Q |
12 |
atggacatcaacatgtatgtcctagtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagt |
111 |
Q |
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| T |
23924613 |
atggacatcaacatgtatgtcctagtactattctagctatttcatgctttttactcctttcttgagttttagaattctaagatattcattgctattgagt |
23924514 |
T |
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| Q |
112 |
caaaataaaatgctactaaaaggccagaattgtagacttatacgtatgactaattgtt |
169 |
Q |
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| T |
23924513 |
caaaataaaatgctactaaaaggccagaattgtagacttatacgtatgactaattgtt |
23924456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 11845593 - 11845451
Alignment:
| Q |
35 |
agtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaagg |
134 |
Q |
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| T |
11845593 |
agtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaagg |
11845494 |
T |
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| Q |
135 |
ccagaattgtagacttatacgtatgactaattgttgttataaa |
177 |
Q |
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| T |
11845493 |
ccagaattgtagacttatacgtatgactaattgttgttataaa |
11845451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 10642224 - 10642370
Alignment:
| Q |
253 |
agcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagttgttcatctctatctttagccttttcagctgaagt |
352 |
Q |
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| T |
10642224 |
agcatattgaggatccagtccaggagcatgcaaaaggggttgatcagagtatcggtgaggtaagttgttcatctctatttttagccttttcagctgaagt |
10642323 |
T |
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| Q |
353 |
agaaaagctagaagcagacttgtagtgctatacctgtttaaatagtt |
399 |
Q |
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| T |
10642324 |
agaaaagctagaagcagacttgtagtgctatacctgtttaaatagtt |
10642370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 298 - 399
Target Start/End: Complemental strand, 32713560 - 32713459
Alignment:
| Q |
298 |
agagtattggtgaggtaagttgttcatctctatctttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatag |
397 |
Q |
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| T |
32713560 |
agagtattggtgaggtaagttgttcatctctatttttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatag |
32713461 |
T |
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| Q |
398 |
tt |
399 |
Q |
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|| |
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| T |
32713460 |
tt |
32713459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 10642187 - 10642226
Alignment:
| Q |
298 |
agagtattggtgaggtaagttgttcatctctatctttagc |
337 |
Q |
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| T |
10642187 |
agagtattggtgaggtaagttgttcatctctatttttagc |
10642226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 88860 - 88941
Alignment:
| Q |
225 |
aacacaaaatatatagttgtgtctttgaagcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattg |
306 |
Q |
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|||||| || |||||| |||||||||| | ||| |||||||||| | ||||||||||||||||||||||| ||||||||| |
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| T |
88860 |
aacacagaagatatagctgtgtctttggatcatgttgaggatcccactgaggagcatgcaaaaggggttgataagagtattg |
88941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 88991 - 89043
Alignment:
| Q |
339 |
ttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgttt |
391 |
Q |
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||||||| |||| ||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
88991 |
ttttcaggtgaaatagaaaagctagaagtagactcgtagtgctataactgttt |
89043 |
T |
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