View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_low_6 (Length: 353)
Name: NF8311_low_6
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 136 - 344
Target Start/End: Complemental strand, 7491678 - 7491475
Alignment:
| Q |
136 |
acaaaaatatacgtgtttccttatttcaaaagatatttccaccaactcaaataattttttcaataaataatcctctatataataaacctctcttttcctt |
235 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | |
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| T |
7491678 |
acaaaaatatacgtctttccttatttcaaaagatatttccaccaactcaaataattttttcaataaataatcctctatataataagcctctctttt-cat |
7491580 |
T |
|
| Q |
236 |
caaatcagaaaaccacaaggtacaccacccnnnnnnnnnnnnnnntcacacggtgttgttttcaatagttaatttgtaccatggcatccaaatccttcag |
335 |
Q |
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|||||| |||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7491579 |
caaatctgaaaaccacaaggtccgccacccaaaaaaaaaacc----cacacggtattgttttcaatagttaatttgtaccatggcatccaaatccttcag |
7491484 |
T |
|
| Q |
336 |
catctctgc |
344 |
Q |
| |
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||||||||| |
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| T |
7491483 |
catctctgc |
7491475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 136 - 344
Target Start/End: Complemental strand, 7484982 - 7484781
Alignment:
| Q |
136 |
acaaaaatatacgtgtttccttatttcaaaagatatttccaccaactcaaataattttttcaataaataatcctctatataataaacctctcttttcctt |
235 |
Q |
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|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| | |
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| T |
7484982 |
acaaaaatatacgtctttccttatttcaaaatatatttccaccaactcaaatatttttttcaataaataatcctctatataataagcctctccttt-caa |
7484884 |
T |
|
| Q |
236 |
caaatcagaaaaccacaaggtacaccacccnnnnnnnnnnnnnnntcacacggtgttgttttcaatagttaatttgtaccatggcatccaaatccttcag |
335 |
Q |
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||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| | || |
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| T |
7484883 |
caaatcagaaaaccacaaggtacaccacc------taaaaaaaaaacacaaggtattgttttcaatagttaatttgtaccatggcatccaaatcccttag |
7484790 |
T |
|
| Q |
336 |
catctctgc |
344 |
Q |
| |
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|||| |||| |
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| T |
7484789 |
catcactgc |
7484781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 7499396 - 7499279
Alignment:
| Q |
136 |
acaaaaatatacgtgtttccttatttcaaaagatatttccaccaactcaaataattttttcaataaata-atcctctatataataaacctctcttttcct |
234 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| |||| | |
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| T |
7499396 |
acaaaaatatacgtctttccttattgcagaagatatttccaccaactcaaataattttttcaataaatattttctctatataataagcctctatttt-ca |
7499298 |
T |
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| Q |
235 |
tcaaatcagaaaaccacaa |
253 |
Q |
| |
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||||||||||||||||||| |
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| T |
7499297 |
tcaaatcagaaaaccacaa |
7499279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 7491794 - 7491735
Alignment:
| Q |
20 |
aagccaaccgtgttgaagtaaatcccatatcagatatattcatgcacaaatcaaatggtg |
79 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
7491794 |
aagccaaccgtgttgaagtaaatcccatatcagatatattcatgcacaaatcaaacggtg |
7491735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 7499258 - 7499196
Alignment:
| Q |
282 |
cacacggtgttgttttcaatagttaatttgtaccatggcatccaaatccttcagcatctctgc |
344 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7499258 |
cacaaggtattgttttcaatagtcaatttgtaccatggcatccaaatccttcagcatctctgc |
7499196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 7499520 - 7499477
Alignment:
| Q |
38 |
taaatcccatatcagatatattcatgcacaaatcaaatggtgca |
81 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||| |||||| |
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| T |
7499520 |
taaatcccaaatcagagatattcatgcacaaatcaaacggtgca |
7499477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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