View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_low_7 (Length: 322)
Name: NF8311_low_7
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 32349132 - 32348839
Alignment:
| Q |
11 |
gatcacagtatctactcatagtcttcaagatcattgacctctccaactcttttgttcttaattaatgatttaagaaggcctagatgcacttcatatatat |
110 |
Q |
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| T |
32349132 |
gatcacagtatctactcatagtcttcaagatcactgacctctccaactcttttgttcttaattaatgatttaagaaggcctagatgcacttcatatatat |
32349033 |
T |
|
| Q |
111 |
gtcatgttgtgctgcatttgttcattctttaaagtacaagcttttatcagaaatgcacaaccatgtgtttctttcattcaagaatatcaatcacttgcat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32349032 |
gtcatgttgtgctgcatttgttcattctttaaagtacaagcttttatcagaaatgcacaaccatgtgtttctttcattcaagaatatcaatcacttgcat |
32348933 |
T |
|
| Q |
211 |
ataaaagtttattcatgcattacgtgtgttttttcttttaggatattacttgtgtattctaagtgcaactccaacgtgagtttttagtgggtttgt |
306 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32348932 |
ataaaagtttattcatgcattac--gtgttttttcttttaggatattacttgtgtattctaagtgcaactccaacgtgagtttttagtgggtttgt |
32348839 |
T |
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