View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8311_low_9 (Length: 315)
Name: NF8311_low_9
Description: NF8311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8311_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 38183198 - 38182902
Alignment:
| Q |
1 |
ttataaaagggatgccatggaaaccagacgtggttgttattttgggatctttgctggcatctagcaagaataatggcaacaccgagttggctgaaagagt |
100 |
Q |
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| T |
38183198 |
ttataaaagggatgccatggaaaccaggcgtggttgttattttgggatctttgctggcatctagcaagaataatggcaacactgagttggctgaaagagt |
38183099 |
T |
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| Q |
101 |
agcgaaagaaattcttgctctggaaccacataatcatggagctcatgttgctttgtcaaatatgtacgcagaggctagacaatggcccaaagttttgaga |
200 |
Q |
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| T |
38183098 |
agcgaaagaaattcttgctctggaaccacataatcatggagctcatgttgctttgtcaaatatgtacgcataggctagacaatggcccaaagttttgaga |
38182999 |
T |
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| Q |
201 |
ctgagaaagatgatgaaagaagagaaactcaagaaagctccaggatggaaccttgttgccacttaattgagtttctaacatggattgcatatgacac |
297 |
Q |
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| T |
38182998 |
ctgagaaagatgatgaaagaagagaaactcaagaaagctccaggatggaaccttgttgccacttaattgagtttctaacatggcttgcatatgacac |
38182902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 283
Target Start/End: Complemental strand, 12011148 - 12010871
Alignment:
| Q |
3 |
ataaaagggatgccatggaaaccagacgtggttgttattttgggatctttgctggcatctagcaagaataatggcaacaccgagttggctgaaagagtag |
102 |
Q |
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| T |
12011148 |
ataaaagggatgccatggaaacctgacgtggtt---attttgggagctttattggcagctagcaagaataatggaaacaccgaggttgctgaaagggttg |
12011052 |
T |
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| Q |
103 |
cgaaagaaattcttgctctggaaccacataatcatggagctcatgttgctttgtcaaatatgtacgcagaggctagacaatggcccaaagttttgagact |
202 |
Q |
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| T |
12011051 |
tgaaacaaattcttactctggatcctcataatcatggtgttcatgtttctttgtcgaatatgtacgcagaggctggacaatggcaggaggtttcgagatt |
12010952 |
T |
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| Q |
203 |
gagaaagatgatgaaagaagagaaactcaagaaagctccaggatggaaccttgttgccacttaattgagtttctaacatgg |
283 |
Q |
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||| ||||||||||||||||||||||||||||||||||| || |||| ||||||| ||||||||||| |||||||||||| |
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| T |
12010951 |
gaggaagatgatgaaagaagagaaactcaagaaagctccggggtggagccttgttaccacttaattgcatttctaacatgg |
12010871 |
T |
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