View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8312_low_1 (Length: 410)
Name: NF8312_low_1
Description: NF8312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8312_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 4601704 - 4601461
Alignment:
| Q |
14 |
tactggcaagagtcatgtttttcttctaatatagtaatttgtacaactgcatacaggacgtgtaaaggatggaaagaatgcagatatagctattgatcac |
113 |
Q |
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| T |
4601704 |
tactggcaggagtcatatttttcttctaatatagtaatttgtacaactgcatacaggacgtgtaaaggatggaaagaatgcagatatagctattgatcac |
4601605 |
T |
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| Q |
114 |
tatcatcgctataaggtacctctaatgcgatatataaattcagattaattgatacaaattgtaactataaatcaaataattttagtccttcnnnnnnntc |
213 |
Q |
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| T |
4601604 |
tatcatcgctataaggtacctctaatgcgatatataatttcagattaattgatacaaattgtaactataaatcaaataattttagtcctttaaaaaaatc |
4601505 |
T |
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| Q |
214 |
aaataatttttgtcnnnnnnnnggtcataatagattgacaatgt |
257 |
Q |
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| T |
4601504 |
aaataatttttgtcaaaaaaaaggtcataatagattgacaatgt |
4601461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 4625941 - 4625768
Alignment:
| Q |
26 |
tcatgtttttcttctaatatagtaatttgtacaactgcatacaggacgtgtaaaggatggaaagaatgcagatatagctattgatcactatcatcgctat |
125 |
Q |
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| T |
4625941 |
tcatatttttcttctaatgtggtaattggtgtaactgcatacagggatggtaaaggatggaaagaatgcagatgtagctattgatcactatcatcgttat |
4625842 |
T |
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| Q |
126 |
aaggtacctctaatgcgatatataaattcagattaattgatacaaattgtaactataaatcaaataattttagt |
199 |
Q |
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| T |
4625841 |
aaggtacctctaatgtgatatataatttcagattaattgatacaaattgtaactgtacatcaaataattttagt |
4625768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 18801720 - 18801857
Alignment:
| Q |
61 |
tgcatacaggacgtgtaaaggatggaaagaatgcagatatagctattgatcactatcatcgctataaggtacctctaatgcgatatataaattcagatta |
160 |
Q |
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||||||||||| | |||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||| | |||| ||| || ||||||||| || |
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| T |
18801720 |
tgcatacaggaaatataaaggatggaaagaacgcagatgtagctgttgatcactatcatcgttataaggtacacccaatgtgatgtaaaaattcagaata |
18801819 |
T |
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| Q |
161 |
attgatacaaattgtaactataaatcaaataattttag |
198 |
Q |
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| T |
18801820 |
attgatatatattgtaacagtaaatcaaatgattttag |
18801857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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