View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8312_low_4 (Length: 230)
Name: NF8312_low_4
Description: NF8312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8312_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 25286768 - 25286667
Alignment:
| Q |
1 |
tcatcctcatcatcaattcatcaaaccatgtttgcgaagagattgttacacaaagctgtgcaacaccattacaacgtaagaaacaaataaaaaccatgtc |
100 |
Q |
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| T |
25286768 |
tcatcatcatcatcaattcatcaaaccatgtttgctaagagattgttacacaaagctgtgcaacaccattacaacgtaagaaacaaataaaaaccatgtc |
25286669 |
T |
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| Q |
101 |
tt |
102 |
Q |
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|| |
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| T |
25286668 |
tt |
25286667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 25286581 - 25286539
Alignment:
| Q |
188 |
gcagcgaggtagtttacaatcaactgaattggatccaagaatt |
230 |
Q |
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| T |
25286581 |
gcagcaaggtagtttacaatcaactgaattggatccaagaatt |
25286539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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