View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8313_high_10 (Length: 349)

Name: NF8313_high_10
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8313_high_10
NF8313_high_10
[»] chr4 (5 HSPs)
chr4 (106-248)||(24395356-24395508)
chr4 (18-124)||(24395523-24395629)
chr4 (251-312)||(24395272-24395333)
chr4 (250-291)||(39274930-39274971)
chr4 (276-312)||(25196131-25196167)
[»] chr7 (2 HSPs)
chr7 (245-303)||(45375431-45375490)
chr7 (270-304)||(47507599-47507633)
[»] chr2 (5 HSPs)
chr2 (243-306)||(2769327-2769390)
chr2 (251-312)||(2393115-2393176)
chr2 (253-312)||(4238400-4238459)
chr2 (271-312)||(8773748-8773789)
chr2 (279-311)||(26025839-26025871)
[»] chr8 (1 HSPs)
chr8 (273-312)||(7044406-7044445)
[»] chr1 (4 HSPs)
chr1 (268-312)||(34445656-34445700)
chr1 (268-312)||(45584526-45584570)
chr1 (253-306)||(5115687-5115740)
chr1 (250-306)||(35259127-35259184)
[»] chr6 (2 HSPs)
chr6 (273-312)||(6048345-6048384)
chr6 (274-306)||(11675630-11675662)
[»] chr3 (2 HSPs)
chr3 (270-312)||(38388701-38388743)
chr3 (253-312)||(34758900-34758960)
[»] chr5 (2 HSPs)
chr5 (248-312)||(31889581-31889646)
chr5 (268-312)||(19692710-19692754)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 24395508 - 24395356
Alignment:
Q  106 tagcaactacaacctttttaaactcaattcgtttaatatcaatcttttaaaaactaattctaccaaaacctaaattaatcaaattatatatgca------ 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          
T  24395508 tagcaactacaacctttttaaactcaattcgtttaatatcaatcttttaaaaactaattctaccaaaacctaaattaaacaaattatatatgcaagcaaa 24395409  T
Q  200 ----aatggaaaaaccatttatcatccttattatattattcaagtcaaattta 248  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24395408 tgtgaatggaaaaaccatttatcatccttattatattattcaagtcaaattta 24395356  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 24395629 - 24395523
Alignment:
Q  18 attatgtggtcgacgaattccttactcaacataatttccaaaagttccttcaaaaacaaaactaaatttccaaaagacaaatcaattttagcaactacaa 117  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24395629 attatgtggtcgacgaatcccttactcaacttaatttccaaaagttccttcaaaaacaaaactaaatttccaaaagacaaatcaattttagcaactacaa 24395530  T
Q  118 ccttttt 124  Q
    |||||||    
T  24395529 ccttttt 24395523  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 24395333 - 24395272
Alignment:
Q  251 gatcttattaacgagagccccggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    |||||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||||    
T  24395333 gatcttgttaacgagtgtcccggggcactctttaaggattctaaaagaagaaattaatttat 24395272  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 39274930 - 39274971
Alignment:
Q  250 ggatcttattaacgagagccccggggcactctttaagtattc 291  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  39274930 ggatcttattaacgagtgccccggggcactatttaagcattc 39274971  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 25196131 - 25196167
Alignment:
Q  276 cactctttaagtattctaaaagaagaaattaatttat 312  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  25196131 cactctttaaggattctaaaagaaaaaattaatttat 25196167  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 45375490 - 45375431
Alignment:
Q  245 tttatggatcttattaacgagagcc-ccggggcactctttaagtattctaaaagaagaaa 303  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||    
T  45375490 tttatgggtcttattaacgagtgcctccggggcactctttaaggattctaaaagaagaaa 45375431  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 47507599 - 47507633
Alignment:
Q  270 ccggggcactctttaagtattctaaaagaagaaat 304  Q
    ||||||||||||||||| |||||||||||||||||    
T  47507599 ccggggcactctttaaggattctaaaagaagaaat 47507633  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 2769390 - 2769327
Alignment:
Q  243 aatttatggatcttattaacgagagccccggggcactctttaagtattctaaaagaagaaatta 306  Q
    ||||||||| |||| |||||||| |||||||||||||||||||| |||| ||||| ||||||||    
T  2769390 aatttatgggtcttgttaacgagtgccccggggcactctttaagcattcaaaaaggagaaatta 2769327  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 2393176 - 2393115
Alignment:
Q  251 gatcttattaacgagagccccggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    |||||| |||||||| || |||| ||| |||||||| |||||||||||||||||||||||||    
T  2393176 gatcttgttaacgagtgctccggagcattctttaaggattctaaaagaagaaattaatttat 2393115  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 4238459 - 4238400
Alignment:
Q  253 tcttattaacgagagccccggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    ||||||||||||| | |||||| ||||||||||| |||| |||||||||||||| |||||    
T  4238459 tcttattaacgagtgtcccgggacactctttaaggattcaaaaagaagaaattattttat 4238400  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 8773789 - 8773748
Alignment:
Q  271 cggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    |||||||||||||||  ||||||||||||||||||| |||||    
T  8773789 cggggcactctttaaagattctaaaagaagaaattattttat 8773748  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 26025871 - 26025839
Alignment:
Q  279 tctttaagtattctaaaagaagaaattaattta 311  Q
    |||||||| ||||||||||||||||||||||||    
T  26025871 tctttaaggattctaaaagaagaaattaattta 26025839  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 7044445 - 7044406
Alignment:
Q  273 gggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  7044445 gggcactctttaaggattctaaaagaagaaattaatttat 7044406  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 34445656 - 34445700
Alignment:
Q  268 ccccggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    |||||| |||||||||||| |||| ||||||||||||||||||||    
T  34445656 ccccggagcactctttaaggattccaaaagaagaaattaatttat 34445700  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 45584526 - 45584570
Alignment:
Q  268 ccccggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||    
T  45584526 ccccggggcactctttaaggattccaaaagaagaaattattttat 45584570  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 5115740 - 5115687
Alignment:
Q  253 tcttattaacgagagccccggggcactctttaagtattctaaaagaagaaatta 306  Q
    |||||||||||||  |||||  |||||||||||| |||||||||||| ||||||    
T  5115740 tcttattaacgagtaccccgacgcactctttaaggattctaaaagaataaatta 5115687  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 35259184 - 35259127
Alignment:
Q  250 ggatcttattaacgagagccc-cggggcactctttaagtattctaaaagaagaaatta 306  Q
    ||||||| |||||||| |||| ||||||||||||||||||| |||||  |||||||||    
T  35259184 ggatcttgttaacgagtgccctcggggcactctttaagtatgctaaattaagaaatta 35259127  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 6048384 - 6048345
Alignment:
Q  273 gggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  6048384 gggcactctttaaaaattctaaaagaagaaattaatttat 6048345  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 11675630 - 11675662
Alignment:
Q  274 ggcactctttaagtattctaaaagaagaaatta 306  Q
    ||||||||||||| |||||||||||||||||||    
T  11675630 ggcactctttaagcattctaaaagaagaaatta 11675662  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 38388701 - 38388743
Alignment:
Q  270 ccggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    |||||||||| |||||  |||||||||||||||||||||||||    
T  38388701 ccggggcactatttaaagattctaaaagaagaaattaatttat 38388743  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 34758900 - 34758960
Alignment:
Q  253 tcttattaacgagagcc-ccggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    |||| |||||||| ||| ||||||||||||||||| |||| |||||||| ||||| |||||    
T  34758900 tcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttat 34758960  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 31889581 - 31889646
Alignment:
Q  248 atggatcttattaacgagagccccggg-gcactctttaagtattctaaaagaagaaattaatttat 312  Q
    ||||||||| |||||||| |||||  | | |||||||||  |||||||||||||||||||||||||    
T  31889581 atggatctttttaacgagtgcccccagagtactctttaacgattctaaaagaagaaattaatttat 31889646  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 19692710 - 19692754
Alignment:
Q  268 ccccggggcactctttaagtattctaaaagaagaaattaatttat 312  Q
    ||||||||||||||||||  |||  ||||||||||||||||||||    
T  19692710 ccccggggcactctttaaagatttcaaaagaagaaattaatttat 19692754  T

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