View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_high_12 (Length: 330)
Name: NF8313_high_12
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7114857 - 7114933
Alignment:
| Q |
1 |
tcaataagaattt-tgacaagaccttgttcagcaacattctactttctaaaacggcaaatattattaatcacaagct |
76 |
Q |
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| T |
7114857 |
tcaataagaatttgtgacaagatcttgttcagcaacattctactttctaaaacggcaaatattattaatcacaagct |
7114933 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 47607826 - 47607879
Alignment:
| Q |
56 |
aaatattattaatcacaag-ctgtgcaagatgcactaacaaactcggatgaaag |
108 |
Q |
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| T |
47607826 |
aaatattattaatcacaagtccgcgcaagacgcactaacaagctcggatgaaag |
47607879 |
T |
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