View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_high_15 (Length: 280)
Name: NF8313_high_15
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 48221913 - 48221671
Alignment:
| Q |
20 |
ataaagtcaacagtcctactaatccaaacttttgtagaatatggtggttctttctattcaatagaagcaaaataggaacaccaatgctaggtgtaatttg |
119 |
Q |
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| T |
48221913 |
ataaagtcaacagtcctactaatccaaacttttgtggaatatggtggttctttctattcaatagaggcaaaataggaacaccaatgctaggtgtaatttg |
48221814 |
T |
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| Q |
120 |
ttgaagacagagaaaatatccaatcatattgttcttactttcttggctaggctaggctagatggcatagttcacggttctattattgatcgtgtccggtc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48221813 |
ttgaagacagagaaaatatccaatcatattgttcttactttcttggctaggctaggctagatggcatagttcacggttctattattgatcgtgtccggtc |
48221714 |
T |
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| Q |
220 |
ccaagcatgatatcagcaccatacacagacatagtggtttcat |
262 |
Q |
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| T |
48221713 |
ccaagcatgatatcagcaccatacacagacatagtggtttcat |
48221671 |
T |
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