View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8313_high_16 (Length: 273)

Name: NF8313_high_16
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8313_high_16
NF8313_high_16
[»] chr6 (2 HSPs)
chr6 (30-273)||(21189885-21190128)
chr6 (1-36)||(23017521-23017556)
[»] scaffold0462 (2 HSPs)
scaffold0462 (1-36)||(14-49)
scaffold0462 (1-36)||(5520-5555)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-36)||(65500-65535)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-36)||(78765-78800)
[»] chr8 (2 HSPs)
chr8 (1-36)||(20179934-20179969)
chr8 (1-36)||(22259775-22259810)
[»] chr7 (2 HSPs)
chr7 (1-36)||(44373550-44373585)
chr7 (1-36)||(44382406-44382441)
[»] chr5 (1 HSPs)
chr5 (1-36)||(26761030-26761065)
[»] chr3 (2 HSPs)
chr3 (1-36)||(22308051-22308086)
chr3 (1-36)||(53647287-53647322)
[»] chr2 (1 HSPs)
chr2 (1-36)||(24782337-24782372)
[»] chr1 (1 HSPs)
chr1 (1-36)||(41228161-41228196)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 21189885 - 21190128
Alignment:
Q  30 gaggtgaagtggggatgttgtcccaaaaggaagtggaaatcaaagtattaaaatgaagtttgcagaattgtggagaatgttaaaatgaaatgattctatg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21189885 gaggtgaagtggggatgttgtcccaaaaggaagtggaaatcaaagtattaaaatgaagtttgcagaattgtggagattgttaaaatgaaatgattctatg 21189984  T
Q  130 atcgatgtttcaatggtcaagctcgaaatggttgaaagatggtaatatgaattcaaaatattttcatagatgtgtgaaagtaagggtatatcgaaatggg 229  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21189985 atcgatgtttcaatggtcgagctcgaaatggttgaaagatggtaatatgaattcaaaatattttcatagatgtgtgaaagtaagggtatatcgaaatggg 21190084  T
Q  230 acggatctagacttttaccatatatgttataacttcttttgctc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  21190085 acggatctagacttttaccatatatgttataacttcttttgctc 21190128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23017521 - 23017556
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  23017521 gattatgttgttatatgatgaatgtatatgaggtga 23017556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 49 - 14
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  49 gattatgttgttatatgatgaatgtatatgaggtga 14  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5555 - 5520
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  5555 gattatgttgttatatgatgaatgtatatgaggtga 5520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 65500 - 65535
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  65500 gattatgttgttatatgatgaatgtatatgaggtga 65535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 78765 - 78800
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  78765 gattatgttgttatatgatgaatgtatatgaggtga 78800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20179934 - 20179969
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  20179934 gattatgttgttatatgatgaatgtatatgaggtga 20179969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22259775 - 22259810
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  22259775 gattatgttgttatatgatgaatgtatatgaggtga 22259810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44373585 - 44373550
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44373585 gattatgttgttatatgatgaatgtatatgaggtga 44373550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44382441 - 44382406
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44382441 gattatgttgttatatgatgaatgtatatgaggtga 44382406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26761065 - 26761030
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  26761065 gattatgttgttatatgatgaatgtatatgaggtga 26761030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22308051 - 22308086
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  22308051 gattatgttgttatatgatgaatgtatatgaggtga 22308086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 53647287 - 53647322
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  53647287 gattatgttgttatatgatgaatgtatatgaggtga 53647322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24782337 - 24782372
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  24782337 gattatgttgttatatgatgaatgtatatgaggtga 24782372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41228161 - 41228196
Alignment:
Q  1 gattatgttgttatatgatgaatggatatgaggtga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  41228161 gattatgttgttatatgatgaatgtatatgaggtga 41228196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University