View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_high_22 (Length: 218)
Name: NF8313_high_22
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 31159183 - 31159011
Alignment:
| Q |
1 |
ttggtgaaatatgaagcccttgttgcctcaacaatctaaacagcacggaaagagtgcaaaggttgtcttcataagt---tatttctccattttcaacata |
97 |
Q |
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| T |
31159183 |
ttggtgaaacatgaagtccttgttgcctcaacaacctaaatagcacagcaagagagcaaaggttgtcttcaaaaataattatttctccattttgaacata |
31159084 |
T |
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| Q |
98 |
attcttgtgaatatgttgcaaaacctcttcaatctcatgttcaaaatgatagctcacacccaaacggcatatt |
170 |
Q |
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| T |
31159083 |
attcttatgaatatgttgcaaaacctcttcaatctcattttcaaaatgatagctcacacccaaacgacatatt |
31159011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 31198549 - 31198379
Alignment:
| Q |
3 |
ggtgaaatatgaagcccttgttgcctcaacaatctaaacagcacggaaagagtgcaaaggttgtcttc----ataagttatttctccattttcaacataa |
98 |
Q |
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| T |
31198549 |
ggtgaaacgtgaagtccttgttgcctcagcaacctaaatagcacagcaagagagcaaaggttgttttcgaaaataa-ttatttctccattttgaacataa |
31198451 |
T |
|
| Q |
99 |
ttcttgtgaatatgttgcaaaacctcttcaatctcatgttcaaaatgatagctcacacccaaacggcatatt |
170 |
Q |
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| T |
31198450 |
ttcttatgaatatgttgcaaaacctcttcaatctccttttcaaagtgataactcacacccaagcggcatatt |
31198379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 41352135 - 41352312
Alignment:
| Q |
1 |
ttggtgaaatatgaagcccttgttgcctcaacaatctaaacagcacggaaagagtgcaaaggttgtcttcataagt------tatttctccattttcaac |
94 |
Q |
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| T |
41352135 |
ttggtgaaacgtgaaatccttgttgcctcaacaacctaaatagcacagcaagagagcaaatgttgtcttcaaaagtaattattatttctccattttcaac |
41352234 |
T |
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| Q |
95 |
ataattcttgtgaatat--gttgcaaaacctcttcaatctcatgttcaaaatgatagctcacacccaaacggcatatt |
170 |
Q |
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| T |
41352235 |
ataattattgtgaatatatgtagcaaaacctcttcaatctcatgttcaaaatgatagcttattcccaaacgacatatt |
41352312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 25832248 - 25832079
Alignment:
| Q |
1 |
ttggtgaaatatgaagcccttgttgcctcaacaatctaaacagcacggaaagagtgcaaaggttgtcttcataagttatttctccattttcaacataatt |
100 |
Q |
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| T |
25832248 |
ttggtgaaacataaaatccttgttgcctcaaaaccctaaatagcacagcgagagagtaaaggctgtctttaagaattatttctccattttcaacacagct |
25832149 |
T |
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| Q |
101 |
cttgtgaatatgttgcaaaacctcttcaatctcatgttcaaaatgatagctcacacccaaacggcatatt |
170 |
Q |
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| T |
25832148 |
gttgtgaatatgttgcaaaacttcgtcaatctcgttttcaaaatgataactaacaccgagacgacatatt |
25832079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 25792122 - 25791951
Alignment:
| Q |
1 |
ttggtgaaatatgaagcccttgttgcctcaacaatctaaacagcacggaaagagtgcaaaggttgtcttcataagt---tatttctccattttcaacata |
97 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| ||||| | ||||| |||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
25792122 |
ttggtgaaacgtgaagtccttgttgcctcaacaacctaaatagcacagcaagagagcaaaggttgtcttcaaaagtaattatttctccattttgaacata |
25792023 |
T |
|
| Q |
98 |
attcttgtgaatatgttgcaaaacctcttcaatctcatgttcaaaatgatagctcacacccaaacggcatat |
169 |
Q |
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| T |
25792022 |
attcttgtgaatatcttgcaaaatctcatcaatctcatcttcaaaatgatagttcaaacccaaacggcatat |
25791951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 2326324 - 2326173
Alignment:
| Q |
18 |
ccttgttgcctcaacaatctaaacagcacggaaagagtgcaaaggttgtcttcataagttatttctccattttcaacataattcttgtgaatatgttgca |
117 |
Q |
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|||||||||||||||| || || || || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||| |
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| T |
2326324 |
ccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttcaagcgttatttctccattttcaacatagctcttgtgaatgtattgca |
2326225 |
T |
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| Q |
118 |
aaacctcttcaatctcatgttcaaaatgatagctcacacccaaacggcatat |
169 |
Q |
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||| || |||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
2326224 |
taacttcatcaatctcattttcgtaatgatagctcacacccaaacgacatat |
2326173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 14267644 - 14267796
Alignment:
| Q |
18 |
ccttgttgcctcaacaatctaaacagcacggaaagagtgcaaaggttgtcttcataagttatttctccattttcaacataattcttgtgaatatgttgca |
117 |
Q |
| |
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|||||||||||||||| ||||| ||||| | ||||| |||||||||||||| | ||| |||||||||||||||| | ||||||||| ||||||| |
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| T |
14267644 |
ccttgttgcctcaacaccctaaatagcacagcaagagaaaaaaggttgtcttcaagaattacttctccattttcaacacagctcttgtgaacttgttgca |
14267743 |
T |
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| Q |
118 |
aaacctcttcaatctcatgttcaaaatgatagctcacacccaaacggcatatt |
170 |
Q |
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|||| || ||||| || | |||||| ||||| |||||||||||||| |||||| |
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| T |
14267744 |
aaacatcatcaatttctttttcaaagtgataactcacacccaaacgacatatt |
14267796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 17179384 - 17179232
Alignment:
| Q |
18 |
ccttgttgcctcaacaatctaaacagcacggaaagagtgcaaaggttgtcttcataagttatttctccattttcaacataattcttgtgaatatgttgca |
117 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || | ||| ||||||||||||| | | | ||||||||||||||| | |||| |||| || ||| |
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| T |
17179384 |
ccttgttgcctcaataacctaaatagcactgagatggtgtgaaggttgtcttcaataataagatctccattttcaacacagttctcatgaaagtgcagca |
17179285 |
T |
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| Q |
118 |
aaacctcttcaatctcatgttcaaaatgatagctcacacccaaacggcatatt |
170 |
Q |
| |
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|| | || ||||| ||||||| |||||||||| ||||||||||||| |||||| |
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|
| T |
17179284 |
aagcttcatcaatttcatgttgaaaatgatagttcacacccaaacgacatatt |
17179232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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