View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_high_5 (Length: 452)
Name: NF8313_high_5
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 42223568 - 42223141
Alignment:
| Q |
17 |
aatgtggaaggccgacagactcgtctaacctcccatttcatcattgctactataaaattatgggaaatgctaatttatccttatcatctttcgttttcca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42223568 |
aatgtggaaggccgacagactcgtctaacctcccatttcatcattgctactataaaattatgggaaatgctaatttatccttatcatttttcgttttcca |
42223469 |
T |
|
| Q |
117 |
tccaaccttgttgggatgttttgtttttaaagatgcaattttatcattgcctaaagcaatgcctgaagtttattaagcagcacacttctcttacagagtt |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223468 |
tccaatcttgttgggatgttttgtttttaaagatgcaattttatcattgcctaaagcaatgcctgaagtttattaagcagcacacttctcttacagagtt |
42223369 |
T |
|
| Q |
217 |
gcacttgcatcttttgggctgaaatgtaatcagatcgcatccacccaccagaattttaatttataaatatcttcttagtcaatttcatttcaccatatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223368 |
gcacttgcatcttttgggctgaaatgtaatcagatcacatccacccaccagaattttaatttataaatatcttcttagtcaatttcatttcaccatatta |
42223269 |
T |
|
| Q |
317 |
attgttatttaccaagtaacagtcttcaggagcacattatgttatagaatacgttattcacgactttgatgttgaggtgggtgggaaaaaatttacattc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42223268 |
attgttatttaccaagtaacagtcttcaggagcacattatgttatagaatacgttattcacgactttgatgttgagatgggtgggaaaaaatttacattc |
42223169 |
T |
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| Q |
417 |
caaaaagccccttacacagagaataata |
444 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42223168 |
caaaaagccccttacacagagaataata |
42223141 |
T |
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