View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_low_10 (Length: 407)
Name: NF8313_low_10
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 14966074 - 14965703
Alignment:
| Q |
15 |
gagaagaaggcaacaactgccaaaaatgtactactcaaagatcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaac |
114 |
Q |
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| T |
14966074 |
gagaagaatgcagcaactgccgaaagtgtactactcaaaagtcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaac |
14965975 |
T |
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| Q |
115 |
taatggtacttatactttttgttctaattttaacctagaagagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctaccag |
214 |
Q |
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| T |
14965974 |
taatggtactta--ctttttattctaattttaacctagaaaagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctactag |
14965877 |
T |
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| Q |
215 |
taaaaacaaaagcatcaggaagagatagaagagcactcaacccttgcttctctctcatgacttatgccaagatccctcaatcgcacctccaatcatacta |
314 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
14965876 |
taaaaataaaagcatcaggaagagatagaagagcactcaacccttgcttctctctcatgacttctgccaagatccctcaatcgcacctccgatcatacta |
14965777 |
T |
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| Q |
315 |
gacaaacaatttactacatcatattattttctaatatgccatatattgtatctatgaaattacaaaacaaagct |
388 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14965776 |
gacaaacaatttactacatcatattatgttctaatatgccatatattgtatctatgaaattacaaaacaaagct |
14965703 |
T |
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