View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8313_low_11 (Length: 405)

Name: NF8313_low_11
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8313_low_11
NF8313_low_11
[»] chr8 (11 HSPs)
chr8 (4-396)||(15076630-15077022)
chr8 (4-361)||(15171523-15171883)
chr8 (168-396)||(15165121-15165349)
chr8 (4-181)||(15168868-15169045)
chr8 (66-389)||(4506386-4506705)
chr8 (65-194)||(15066747-15066876)
chr8 (66-203)||(15214555-15214692)
chr8 (66-192)||(15052549-15052675)
chr8 (55-187)||(13033412-13033544)
chr8 (66-174)||(15000171-15000279)
chr8 (64-187)||(15751169-15751292)
[»] chr7 (2 HSPs)
chr7 (64-203)||(1618179-1618318)
chr7 (64-203)||(1626744-1626883)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 396
Target Start/End: Original strand, 15076630 - 15077022
Alignment:
Q  4 tccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctctcaaaaataattgaaccaaggctttttgggactcacattccatttcctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15076630 tccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctatcaaaaataattgaaccaaggctttttgggactcacattccatttcctt 15076729  T
Q  104 cacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcatattggattttcattaataaaat 203  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15076730 cacttgccaagtcaattcaagactccaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcatattggattttcattaataaaat 15076829  T
Q  204 aaggtcaaaacatccatctttaccggttttaaacttagaggaaacttttgaaagtttttgcaatggggttactccatttggttcattttgggagcataat 303  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  15076830 aaggtcaaaacatccatctttaccagttttaagcttagaggaaacttttgaaagtttttgtaatgggattactccatttggttcattttgggagcataat 15076929  T
Q  304 ttaggttacttgaaagaaagtatgattaggccagacaaagttttatttttgaaatatgaagaacttaaagaagatccaatttttcatctcact 396  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15076930 ttaggttacttgaaagaaagtatgattaggccagacaaagttatatttttgaaatatgaagaacttaaagaagatccaatttttcatgtcact 15077022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 4 - 361
Target Start/End: Complemental strand, 15171883 - 15171523
Alignment:
Q  4 tccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctctcaaaaataattgaaccaaggctttttgggactcacattccatttcctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15171883 tccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctatcaaaaataattgaaccaaggctttttgggactcacattccatttcctt 15171784  T
Q  104 cacttgccaagtcaattcaagagtccaattgtaagatagt---ttatataagtagaaatccatttgatacttttgtgtcatattggattttcattaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  15171783 cacttgccaagtcaattcaagagtccaattgtaagatagtagtttatataagtagaaatccatttgatacttttgtgtcatattggagtttcgttaataa 15171684  T
Q  201 aataaggtcaaaacatccatctttaccggttttaaacttagaggaaacttttgaaagtttttgcaatggggttactccatttggttcattttgggagcat 300  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15171683 aataaggtcaaaacatccatctttatcagttttaagcttagaggaaacttttgaaagtttttgtaatggggttactccatttggttcattttgggagcat 15171584  T
Q  301 aatttaggttacttgaaagaaagtatgattaggccagacaaagttttatttttgaaatatg 361  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  15171583 aatttaggttacttgaaagaaagtatgactaggtcagacaaagttttatttttgaaatatg 15171523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 168 - 396
Target Start/End: Complemental strand, 15165349 - 15165121
Alignment:
Q  168 tacttttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccggttttaaacttagaggaaacttttgaaagtttttgcaat 267  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||   || ||| |||| |||||||||||||||||||||| |||    
T  15165349 tacttttgtgtcatattggagtttcgttaataaaataaggtcaaaacatccatctttacaaattgtaagcttaaaggaaacttttgaaagtttttgtaat 15165250  T
Q  268 ggggttactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatgattaggccagacaaagttttatttttgaaatatgaagaac 367  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  15165249 ggggtaactccatttggttcattttgggagcatactttaggttacttgaaagaaagtatgactagtccagacaaaattttatttttgaaatatgaagaac 15165150  T
Q  368 ttaaagaagatccaatttttcatctcact 396  Q
    ||||||||||||||||||||||| |||||    
T  15165149 ttaaagaagatccaatttttcatgtcact 15165121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 15169045 - 15168868
Alignment:
Q  4 tccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctctcaaaaataattgaaccaaggctttttgggactcacattccatttcctt 103  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||| | ||||||||||||||||||||| | ||||||||||||||||||||| |||    
T  15169045 tccattgaacgtaatctttatgctgctgatatgaaggaccaaattcctatatcaaaaataattgaaccaaggatatttgggactcacattccattttctt 15168946  T
Q  104 cacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcat 181  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168945 cacttgccaagtcgattcaagagtctaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcat 15168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 66 - 389
Target Start/End: Complemental strand, 4506705 - 4506386
Alignment:
Q  66 tgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccattt 165  Q
    |||||||||||||||||| |||||  |||||||   |||||| |||||||||||| |||||||||||||||| ||| |||||||| |||||||||| |||    
T  4506705 tgaaccaaggctttttgg-actcatgttccattcttttcactagccaagtcaattaaagagtccaattgtaaaataatttatatatgtagaaatcctttt 4506607  T
Q  166 gatacttttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccggttttaaacttagaggaaacttttgaaagtttttgca 265  Q
    || |||||||||||   |||| |||    |||||||||||||||||   ||| |||||||||   ||||| | |||| |||| ||||||||||| |||      
T  4506606 gacacttttgtgtctgcttggttttatgctaataaaataaggtcaa---atcaatctttaccaactttaagcatagatgaaatttttgaaagttattgtg 4506510  T
Q  266 atggggttactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatgattaggccagacaaagttttatttttgaaatatgaaga 365  Q
    ||||| | | ||||||||||||||||||||| ||||| || ||||||||||| ||||| |||  |||  || |||||||| |||| ||||||||||||||    
T  4506509 atgggataagtccatttggttcattttgggatcataagttgggttacttgaaggaaagcatggctagatcacacaaagttctattcttgaaatatgaaga 4506410  T
Q  366 acttaaagaagatccaatttttca 389  Q
      |||||||  || ||||||||||    
T  4506409 tgttaaagagaatgcaatttttca 4506386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 15066747 - 15066876
Alignment:
Q  65 ttgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccatt 164  Q
    ||||||||||||||| ||| |||||||| |||||||||||  |  |||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||    
T  15066747 ttgaaccaaggctttatggaactcacatgccatttccttcgttgcccaagtcaattcaagagtccaattgtaaaataatttatatatgtagaaacccatt 15066846  T
Q  165 tgatacttttgtgtcatattggattttcat 194  Q
    |||||| ||||| |||||||||| ||||||    
T  15066847 tgatacatttgtatcatattggactttcat 15066876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 15214692 - 15214555
Alignment:
Q  66 tgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccattt 165  Q
    |||||||||||||||||| |||||||| |||||||||||  |  |||||||| || |||||||||||||||| ||| |||||||| ||||||| ||||||    
T  15214692 tgaaccaaggctttttggaactcacatgccatttccttcgttgcccaagtcagttaaagagtccaattgtaaaataatttatatatgtagaaacccattt 15214593  T
Q  166 gatacttttgtgtcatattggattttcattaataaaat 203  Q
    ||||| ||||| ||||||||||||||||| || |||||    
T  15214592 gatacatttgtatcatattggattttcatcaacaaaat 15214555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 15052549 - 15052675
Alignment:
Q  66 tgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccattt 165  Q
    |||||||||||||||||| |||||||| |||||||||||  |  |||||||| || |||||||||||||||| ||| |||||||| ||||||| ||||||    
T  15052549 tgaaccaaggctttttggaactcacatgccatttccttcgttgcccaagtcagttaaagagtccaattgtaaaataatttatatatgtagaaacccattt 15052648  T
Q  166 gatacttttgtgtcatattggattttc 192  Q
    ||||  ||||| |||||||||| ||||    
T  15052649 gatatatttgtatcatattggactttc 15052675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 13033412 - 13033544
Alignment:
Q  55 tcaaaaataattgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagta 154  Q
    ||||| || |||||||||||||||||||| |||||||||||||| | |||  |  |||||||  || ||||||||| |||||| ||  |||||||| |||    
T  13033412 tcaaatatgattgaaccaaggctttttggcactcacattccattcctttcgttgcccaagtcggttaaagagtccagttgtaaaatcatttatatatgta 13033511  T
Q  155 gaaatccatttgatacttttgtgtcatattgga 187  Q
    |||| ||||||||||| ||||| ||||||||||    
T  13033512 gaaacccatttgatacatttgtatcatattgga 13033544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 15000171 - 15000279
Alignment:
Q  66 tgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccattt 165  Q
    ||||||||| |||||||| ||||| |||||||||  |||  | |||||||||||| | || ||||||||||||||  |||||||| |||| |||||| ||    
T  15000171 tgaaccaagactttttggaactcatattccatttaattccttggccaagtcaattaaggaatccaattgtaagatcatttatatatgtaggaatccactt 15000270  T
Q  166 gatactttt 174  Q
    || ||||||    
T  15000271 gacactttt 15000279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 15751169 - 15751292
Alignment:
Q  64 attgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccat 163  Q
    |||||||||||||||||||| ||||||||||| ||| ||||  | || ||||||||  | || ||||||||||||||| |||| ||| | || || || |    
T  15751169 attgaaccaaggctttttggaactcacattccttttgcttccttagcaaagtcaatcaaggaatccaattgtaagataatttacatatgcaggaaccctt 15751268  T
Q  164 ttgatacttttgtgtcatattgga 187  Q
    |||| ||||  |||||||||||||    
T  15751269 ttgacacttacgtgtcatattgga 15751292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 1618318 - 1618179
Alignment:
Q  64 attgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccat 163  Q
    |||||||||||||||||||| ||||| ||||| ||| |||| || |||||||||||| |||| ||||||||||||||| |||| ||| ||||||| ||||    
T  1618318 attgaaccaaggctttttggaactcatattccttttacttctctagccaagtcaattaaagaatccaattgtaagataatttacatatgtagaaacccat 1618219  T
Q  164 ttgatacttttgtgtcatattggattttcattaataaaat 203  Q
    |||| ||||||||||| ||||||| |||||| || |||||    
T  1618218 ttgacacttttgtgtcttattggaatttcatgaacaaaat 1618179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 1626883 - 1626744
Alignment:
Q  64 attgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtttatataagtagaaatccat 163  Q
    |||||||||||| ||||||| ||||||||||| || | ||| || |||||||| ||| |||||||||||||||||||| |||| ||| |||| || ||||    
T  1626883 attgaaccaaggatttttggaactcacattcctttccattctctagccaagtctattaaagagtccaattgtaagataatttacatatgtaggaacccat 1626784  T
Q  164 ttgatacttttgtgtcatattggattttcattaataaaat 203  Q
    |||| ||||||||||| ||||||| |||||| || |||||    
T  1626783 ttgacacttttgtgtcttattggaatttcatgaacaaaat 1626744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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