View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_low_12 (Length: 399)
Name: NF8313_low_12
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 14176403 - 14176769
Alignment:
| Q |
20 |
ttggctataggttatgggatccagagaagagaagaattattagaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctaga |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176403 |
ttggctacaggttatgggatccagagaagagaagaattattagaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctaga |
14176502 |
T |
|
| Q |
120 |
aacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttgtcacagaagggggatatcttgatgaagaccctagggttgat |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |
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| T |
14176503 |
aacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgat |
14176602 |
T |
|
| Q |
220 |
ggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14176603 |
ggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccat |
14176702 |
T |
|
| Q |
320 |
ctaccaggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatga |
386 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176703 |
ctaccaggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatga |
14176769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 28609473 - 28609107
Alignment:
| Q |
20 |
ttggctataggttatgggatccagagaagagaagaattattagaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctaga |
119 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28609473 |
ttggctacaggttatgggatccagagaagagaagaattattagaagcagagatgtagtgtttcataagcaagaaactatgtcagattctgctattctaga |
28609374 |
T |
|
| Q |
120 |
aacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttgtcacagaagggggatatcttgatgaagaccctagggttgat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
28609373 |
aacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgat |
28609274 |
T |
|
| Q |
220 |
ggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccat |
319 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||| |
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| T |
28609273 |
ggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagattaagcagagatcatcatccat |
28609174 |
T |
|
| Q |
320 |
ctaccaggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatga |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609173 |
ctaccaggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatga |
28609107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 12933133 - 12933499
Alignment:
| Q |
20 |
ttggctataggttatgggatccagagaagagaagaattattagaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
12933133 |
ttggctataggttatgggatccagagaagagaagaattattagaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctactattctaga |
12933232 |
T |
|
| Q |
120 |
aacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttgtcacagaagggggatatcttgatgaagaccctagggttgat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
12933233 |
aacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgat |
12933332 |
T |
|
| Q |
220 |
ggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
12933333 |
ggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccat |
12933432 |
T |
|
| Q |
320 |
ctaccaggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatga |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12933433 |
ctaccaggtaccctagttcggagtacatcctcatcactgatgagggggagccggacagtttcgatga |
12933499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 15298923 - 15299289
Alignment:
| Q |
20 |
ttggctataggttatgggatccagagaagagaagaattattagaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctaga |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
15298923 |
ttggctacaggttatgggatccagagaagagaagaattattagaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattccaga |
15299022 |
T |
|
| Q |
120 |
aacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttgtcacagaagggggatatcttgatgaagaccctagggttgat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| || |
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| T |
15299023 |
aacacctaaacgttatggtaaggttgatcttacagttaccactcctcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttaat |
15299122 |
T |
|
| Q |
220 |
ggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccat |
319 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
15299123 |
ggtgagttagtagttgaagatggtgatgaggaagatgttcaggatggagagcaatgcccaacatctcagctcaagagatcaagcagagatcatcatccat |
15299222 |
T |
|
| Q |
320 |
ctaccaggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatga |
386 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
15299223 |
ctaccaggtaccctagtttggagtacattctcatcactgttgagggggagccgaaaagttttgatga |
15299289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 30 - 331
Target Start/End: Complemental strand, 38995122 - 38994822
Alignment:
| Q |
30 |
gttatgggatccagag-aagagaagaattattagaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaa |
128 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||| | ||| ||| ||||||||||||||||||||||| || ||| | |||||| ||||||||||| |
|
|
| T |
38995122 |
gttatgggatccaaaataagagaagaatcattagaagtaaagacgtattgtttcatgagcaagaaactatgacaaatt-tactattcctgaaacacctaa |
38995024 |
T |
|
| Q |
129 |
acgttatggtaaggttgatcttacacttaccactcctcctgtaagagttgtcacagaagggggatatcttgatgaagaccctagggttgatggtgagcca |
228 |
Q |
| |
|
| |||||||||||| |||||||| |||||||||||| ||||||||| || |||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
38995023 |
gcacggtggtaaggttgaccttacactaaccactcctcctataagagttgccaaagaagggggagatcttgattaaaaccctagggttgatggtgagcca |
38994924 |
T |
|
| Q |
229 |
gtagttgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccatctaccaggt |
328 |
Q |
| |
|
| |||||||||||||||| ||| | | |||||||||| |||| ||| ||||| || |||| | ||||| ||||||||| |||||||||| |||| |
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|
| T |
38994923 |
acaattgaagatggtgatgacgaaaaaggataggatggagagcaat-ccctacatcacaactcataacatcaaatagagatcattatccatctactaggt |
38994825 |
T |
|
| Q |
329 |
acc |
331 |
Q |
| |
|
||| |
|
|
| T |
38994824 |
acc |
38994822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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