View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8313_low_17 (Length: 316)

Name: NF8313_low_17
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8313_low_17
NF8313_low_17
[»] chr8 (4 HSPs)
chr8 (27-298)||(32536156-32536427)
chr8 (24-228)||(18481113-18481317)
chr8 (26-98)||(26440816-26440888)
chr8 (24-104)||(7251110-7251190)
[»] chr3 (11 HSPs)
chr3 (24-228)||(51976640-51976844)
chr3 (24-228)||(36684785-36684989)
chr3 (24-226)||(8705594-8705796)
chr3 (24-226)||(9057481-9057683)
chr3 (35-188)||(49758956-49759109)
chr3 (24-218)||(45736356-45736550)
chr3 (73-226)||(26390803-26390956)
chr3 (24-174)||(4978441-4978591)
chr3 (52-104)||(25131088-25131140)
chr3 (27-97)||(38998918-38998988)
chr3 (43-88)||(47165391-47165436)
[»] chr2 (4 HSPs)
chr2 (24-228)||(24543093-24543297)
chr2 (24-228)||(29894348-29894552)
chr2 (24-228)||(36364920-36365124)
chr2 (53-104)||(12555415-12555466)
[»] chr1 (9 HSPs)
chr1 (24-228)||(11351624-11351828)
chr1 (24-219)||(6784167-6784362)
chr1 (39-228)||(20639470-20639659)
chr1 (24-212)||(21515101-21515287)
chr1 (26-104)||(44839886-44839964)
chr1 (24-104)||(2536509-2536589)
chr1 (81-160)||(32988972-32989051)
chr1 (26-97)||(51080701-51080772)
chr1 (24-63)||(52823500-52823539)
[»] chr6 (2 HSPs)
chr6 (38-228)||(942573-942763)
chr6 (24-104)||(4513076-4513156)
[»] chr7 (3 HSPs)
chr7 (24-228)||(23820403-23820607)
chr7 (124-226)||(24808878-24808980)
chr7 (26-104)||(21118399-21118476)
[»] chr5 (3 HSPs)
chr5 (24-174)||(41197383-41197533)
chr5 (34-220)||(36779439-36779623)
chr5 (24-107)||(30376454-30376537)
[»] chr4 (6 HSPs)
chr4 (24-228)||(43989285-43989488)
chr4 (42-188)||(19315935-19316081)
chr4 (24-90)||(43813198-43813264)
chr4 (42-104)||(1394129-1394191)
chr4 (52-97)||(49407130-49407175)
chr4 (55-103)||(9633063-9633111)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 27 - 298
Target Start/End: Original strand, 32536156 - 32536427
Alignment:
Q  27 gatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttac 126  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  32536156 gatggggctaccctagctaattcacgagcgaccccattaacttgttttcaattgaactcgacataagagttcataaaattacaagcaatcaattgtttac 32536255  T
Q  127 aagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatcata 226  Q
    ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  32536256 aagcctgaataatacaacctagttcactattatcgtctaggtttgaatgaaagcgatctacaataaacttgtaatccaaagcaaaatcgacatgatcata 32536355  T
Q  227 ataaaagagtagctgcaatgtcgtgtaaagagtaaagaccaacagcctgtcccacataaacatatcaaagag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32536356 ataaaagagtagctgcaatgtcgtgtaaagagtaaagaccaacagcctatcccacataaacatatcaaagag 32536427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 18481317 - 18481113
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| |||||||||||||||| | ||| ||||||||| ||||   |||||||||||||||||| ||||||| ||||||||||| | | ||| |||     
T  18481317 tgagatggggctaccctagctaatttatgagtgaccccattgacttacctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactatc 18481218  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  18481217 tacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 18481118  T
Q  224 ataat 228  Q
    |||||    
T  18481117 ataat 18481113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 26440888 - 26440816
Alignment:
Q  26 agatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttc 98  Q
    |||||| |||||||||||||| ||| |||| ||||||||| ||||  |||||||||||||||||| |||||||    
T  26440888 agatggggctaccctagctaactcatgagcaaccccattagcttgcctcctattgaactcgacatgagagttc 26440816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 7251190 - 7251110
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 104  Q
    |||||||| |||||| ||| |||| || ||| || ||||||   |||  |||||||||||||||||||||||||| |||||    
T  7251190 tgagatggggctaccttagttaatgcatgagtgatcccattggtttgcctcctattgaactcgacataagagttctgaaaa 7251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 51976844 - 51976640
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||| ||| ||||||| ||||||||||| ||| ||| | |     
T  51976844 tgagatggagctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcggcatgagagttctgaaaattacaatcaaacaactttc 51976745  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  51976744 tacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 51976645  T
Q  224 ataat 228  Q
    |||||    
T  51976644 ataat 51976640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 36684989 - 36684785
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| | |     
T  36684989 tgagatggggctaccctagctaattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtc 36684890  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| |||||| |||||||||||||||||||||||  |||| ||||||| |||  | || |||  | ||||| |||||||| ||||||||||||  ||    
T  36684889 tacaagcctgaatgatacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttgcaatccaaaacaaaatcaacattgtc 36684790  T
Q  224 ataat 228  Q
    |||||    
T  36684789 ataat 36684785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 8705796 - 8705594
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| ||||||||| ||||||||  ||||||| ||||| ||||  |||||||||||||||||| ||||||| ||||||||||| ||| ||| |       
T  8705796 tgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagttctgaaaattacaatcaaacaactgcc 8705697  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| ||||||||||||||||||||||||||||||  |||| ||||||| ||| || || |||  | ||||| |||||||| ||||||||||||| ||    
T  8705696 tacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaacatggtc 8705597  T
Q  224 ata 226  Q
    |||    
T  8705596 ata 8705594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 9057683 - 9057481
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| ||||||||| ||||||||  ||||||| ||||| ||||  |||||||||||||||||| ||||||| ||||||||||| ||| ||| |       
T  9057683 tgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagttctgaaaattacaatcaaacaactgcc 9057584  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| ||||||||||||||||||||||||||||||  |||| ||||||| ||| || || |||  | ||||| |||||||| ||||||||||||| ||    
T  9057583 tacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaacatggtc 9057484  T
Q  224 ata 226  Q
    |||    
T  9057483 ata 9057481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 49758956 - 49759109
Alignment:
Q  35 taccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctga 134  Q
    ||||||||  |||||| |||||| ||||||| ||||  ||||||||||| |||||||||||||| ||||||||||||||| |||     |||||||||||    
T  49758956 taccctagtcaattcatgagcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaattacaagcaagcaacagcctacaagtctga 49759055  T
Q  135 ataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctaca 188  Q
    ||||| |||||||||||||||||||| ||||| ||||||| ||| |||| ||||    
T  49759056 ataatgcaacctagttcactactatcctctaggtttgaattaaaacgatataca 49759109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 45736550 - 45736356
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||  |||||||||||||||| |||||||  ||||||    ||  |||||||||||||||||| ||||||| ||||||||||| | | |||||       
T  45736550 tgagatgaggctaccctagctaatttacgagcgttcccattggtctgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaattgcc 45736451  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaaca 218  Q
    |||||  || |||||||||||||| |||||| ||||| ||||||||| ||| ||| || |  |||  | ||||| |||||||| |||||||||||    
T  45736450 tacaaacctaaataatacaacctaattcactgctatcatctagatttaaattaaaacgttgaacaacaaacttgaaatccaaaacaaaatcaaca 45736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 26390803 - 26390956
Alignment:
Q  73 tcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaataatacaacctagttcactactatcgtctagatttga 172  Q
    |||||||||||||||||  ||||||   |||| ||||||||| ||| | | ||||||  || ||||| |||||||||||||||||||| ||||| ||| |    
T  26390803 tcctattgaactcgacacgagagttataaaaactacaagcaaacaactgtctacaagcttgtataatgcaacctagttcactactatcttctaggtttca 26390902  T
Q  173 atgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatcata 226  Q
     | ||| |||||||||   | |||| ||||||||||||| || |||| ||||||    
T  26390903 gttaaaacgatctacaagtgccttgaaatccaaagcaaagtcgacattatcata 26390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 4978441 - 4978591
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||  ||||| |||||||||||| || ||||| ||||  ||||| || |||| |||||||||| ||||||| |||||||| || | | ||| |       
T  4978441 tgagatgtggctacgctagctaattcatgaacgacctcattggcttgtctcatattaaactcgacatgagagttctgaaaattataaccgaacaagtgcc 4978540  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaat 174  Q
    |||||| | |||||||||||||||||| |||| ||||  |||| |||||||    
T  4978541 tacaagccagaataatacaacctagtttactattatcacctaggtttgaat 4978591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 25131088 - 25131140
Alignment:
Q  52 gagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 104  Q
    ||||||||||||||||||  || |||||||||||||||| |||||||||||||    
T  25131088 gagcgaccccattaacttactttctattgaactcgacatgagagttcagaaaa 25131140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 38998988 - 38998918
Alignment:
Q  27 gatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagtt 97  Q
    ||||| |||||||| ||||||||  |||||||||||||| ||||  ||||||| |||||||||| ||||||    
T  38998988 gatggggctaccctcgctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatgagagtt 38998918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 47165391 - 47165436
Alignment:
Q  43 ctaattcacgagcgaccccattaacttgtttcctattgaactcgac 88  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||    
T  47165391 ctaattcacgagcgaccccattgacttgcctcctattgaactcgac 47165436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 24543297 - 24543093
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| |||     
T  24543297 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcatcctattgaactcgacatgagagttctgaaaattacaatcgaacaactatc 24543198  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  24543197 tacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 24543098  T
Q  224 ataat 228  Q
    |||||    
T  24543097 ataat 24543093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 29894348 - 29894552
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| | |     
T  29894348 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtc 29894447  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| ||||||||||||| |||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  29894448 tacaagcctgaataatacaatctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 29894547  T
Q  224 ataat 228  Q
    |||||    
T  29894548 ataat 29894552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 36365124 - 36364920
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| |||||||||||||||||| |||||||| ||||  ||||  ||||||||||||||||||  |||||| |||||| |||| | | ||| |       
T  36365124 tgagatggggctaccctagctaattcatgagcgacctcattggcttgcctcctattgaactcgacatgggagttctgaaaatgacaatcgaacaactgcc 36365025  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    ||||||| ||||||||||||||||||||||| |||||  |||| ||||||| ||| || || |||  ||||||| |||||||| ||||||||||||  ||    
T  36365024 tacaagtatgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagacttggaatccaaaacaaaatcaacattgtc 36364925  T
Q  224 ataat 228  Q
    |||||    
T  36364924 ataat 36364920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 12555415 - 12555466
Alignment:
Q  53 agcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 104  Q
    ||||||||||||||||||  |||||||||||| ||||| ||||||| |||||    
T  12555415 agcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaa 12555466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 11351624 - 11351828
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| | |     
T  11351624 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtc 11351723  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||||||| |||  | || |||  ||||||| |||||||| ||||||||||||  ||    
T  11351724 tacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 11351823  T
Q  224 ataat 228  Q
    |||||    
T  11351824 ataat 11351828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 6784362 - 6784167
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    ||||||||||||||||||| |||||||  ||||||||||||  ||||  |||||||||||||||||| ||||||| |||||| |||| | | ||| | |     
T  6784362 tgagatggagctaccctagttaattcataagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaataacaatcgaacaactgtc 6784263  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacat 219  Q
    |||||| |||||||||||||||||||||||| |||||  |||| ||| ||| ||| || || |||  ||||||| |||||||| ||||||||||||    
T  6784262 tacaagcctgaataatacaacctagttcactgctatcacctaggtttaaattaaaacgttcaacaagagacttgcaatccaaaacaaaatcaacat 6784167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 20639659 - 20639470
Alignment:
Q  39 ctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaataa 138  Q
    |||||||||||| ||| |||| ||||  ||||  ||||||||||||| |||| ||||||| ||||||||||| | | ||| |   |||||| ||||||||    
T  20639659 ctagctaattcatgagtgacctcattggcttgcctcctattgaactcaacatgagagttctgaaaattacaatcgaacaactgcctacaagcctgaataa 20639560  T
Q  139 tacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatcataat 228  Q
    ||||||||||||||||||||||  |||| ||||||| |||  | || |||  | ||||| |||||||| ||||||||||||  |||||||    
T  20639559 tacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaacattgtcataat 20639470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 21515287 - 21515101
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  ||||||||||||||||||  |||||| ||||||||||  | | ||| |       
T  21515287 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacat--gagttctgaaaattacattcgaacaactgcc 21515190  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaa 212  Q
    |||||  ||||| |||||||||||||||||| |||||  |||| ||||||| ||| || || |||  ||||||| |||||||| |||||    
T  21515189 tacaaacctgaaaaatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagacttgcaatccaaaacaaaa 21515101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 44839886 - 44839964
Alignment:
Q  26 agatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 104  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||  |||||||||||||||||| ||||||| |||||    
T  44839886 agatggggctaccctagctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagttctgaaaa 44839964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 2536509 - 2536589
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 104  Q
    |||||||| ||||||||| |||||||| |||||||||||||  ||||  |||||||||||||||||| ||||||| |||||    
T  2536509 tgagatggggctaccctaactaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaa 2536589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 32988972 - 32989051
Alignment:
Q  81 aactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaataatacaacctagttcactactatc 160  Q
    |||||||||| ||||||| |||| |||||| | | ||| |   ||||||||||||||||||||||||||||||| |||||    
T  32988972 aactcgacatgagagttctgaaagttacaatcgaacaactgcctacaagtctgaataatacaacctagttcactgctatc 32989051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 51080701 - 51080772
Alignment:
Q  26 agatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagtt 97  Q
    |||||| |||||||| ||||||||| ||||||||||||||  |||  ||||||| |||||||||| ||||||    
T  51080701 agatggggctaccctcgctaattcatgagcgaccccattagattgcctcctattaaactcgacatgagagtt 51080772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 52823500 - 52823539
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccat 63  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  52823500 tgagatggagctaccctaactaattcatgagcgaccccat 52823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 942763 - 942573
Alignment:
Q  38 cctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaata 137  Q
    |||||||||||||||||||||||||||  ||||  |||||||||||||||||| ||||||| ||||||||||| | | ||| |   |||||| |||||||    
T  942763 cctagctaattcacgagcgaccccattggcttgcctcctattgaactcgacattagagttctgaaaattacaatcgaacaactgcctacaagcctgaata 942664  T
Q  138 atacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatcataat 228  Q
    |||||||||||||||||||||||  |||| ||||| | |||  | || |||  ||||||| |||||||| ||||||||||||  |||||||    
T  942663 atacaacctagttcactactatcacctaggtttgacttaaaatgttcaacaacagacttggaatccaaaacaaaatcaacattgtcataat 942573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 4513156 - 4513076
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 104  Q
    |||||||| ||||||||||||||||||  ||||||||||||  ||||  |||||||||||||||||| ||||||| |||||    
T  4513156 tgagatggggctaccctagctaattcattagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaa 4513076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 23820607 - 23820403
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    ||||||||| |||||||| |||||||| |||||||||||||  ||||  ||||||||||||||| || ||||||| ||||||||||| ||| ||| |       
T  23820607 tgagatggatctaccctatctaattcatgagcgaccccattggcttgcctcctattgaactcgatatgagagttctgaaaattacaatcaaacaactgcc 23820508  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||  |||||| |||||||||||||||||||||||  |||| ||||||| |||| |  | |||  ||||||| |||||||| |||||| |||||| ||    
T  23820507 tacaaacctgaatgatacaacctagttcactactatcacctaggtttgaattaaagtgtacaacaacagacttggaatccaaaacaaaattaacatggtc 23820408  T
Q  224 ataat 228  Q
    |||||    
T  23820407 ataat 23820403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 24808878 - 24808980
Alignment:
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    |||||| ||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||| |||  ||||||| |||| ||| ||||||||||||| ||    
T  24808878 tacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagacttggaatctaaaacaaaatcaacatggtc 24808977  T
Q  224 ata 226  Q
    |||    
T  24808978 ata 24808980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 21118476 - 21118399
Alignment:
Q  26 agatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 104  Q
    |||||| ||||||||||||||  || ||| |||| ||||| ||||  |||||||||||||||||| ||||||| |||||    
T  21118476 agatggtgctaccctagctaac-catgagtgacctcattagcttgcctcctattgaactcgacatgagagttctgaaaa 21118399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 41197383 - 41197533
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| |||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||||||||||| ||||||||||| | | ||| | |     
T  41197383 tgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacataagagttctgaaaattacaatcgaacaactgtc 41197482  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaat 174  Q
    || ||| || ||||||||||||||||||||| |||||  |||| |||||||    
T  41197483 tataagcctaaataatacaacctagttcactgctatcacctaggtttgaat 41197533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 36779439 - 36779623
Alignment:
Q  34 ctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctg 133  Q
    |||||||||||||| || ||| ||| | |||  ||||  |||||||| ||||||||| ||||||| |||  |||||| ||| ||| |   |||||| ||     
T  36779439 ctaccctagctaatccatgagtgacactattggcttgcctcctattgtactcgacatgagagttctgaa--ttacaaccaaacaactgcctacaagcctt 36779536  T
Q  134 aataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatg 220  Q
    |||||||||||||||||||||||| ||   ||| ||||||| ||| || || ||| |||||||| ||||||||  ||||||||||||    
T  36779537 aataatacaacctagttcactactctcaattaggtttgaattaaaacgttcaacaatagacttggaatccaaaataaaatcaacatg 36779623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 30376454 - 30376537
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaatta 107  Q
    |||||||  |||||| ||||||||||| ||||||||| |||  ||||  |||||||||||||||||||||||||  ||||||||    
T  30376454 tgagatgaggctaccgtagctaattcatgagcgaccctattggcttgcctcctattgaactcgacataagagttttgaaaatta 30376537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 43989285 - 43989488
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatt 123  Q
    |||||||| ||||||||| |||||||| |||||||| ||||  ||||  |||||||||||||||||| || ||||  ||||| |||| | | ||||| |     
T  43989285 tgagatggggctaccctaactaattcatgagcgacctcattggcttgcctcctattgaactcgacatgagcgttctaaaaat-acaatcgaacaattgtc 43989383  T
Q  124 tacaagtctgaataatacaacctagttcactactatcgtctagatttgaatgaaagcgatctacattagacttgtaatccaaagcaaaatcaacatgatc 223  Q
    | |||| |||||||||||||||||||||||| |||||  |||| ||||||| ||| || || |||  | ||||| |||||||| ||||||||||||  ||    
T  43989384 tgcaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacaaacttgcaatccaaaacaaaatcaacattgtc 43989483  T
Q  224 ataat 228  Q
    |||||    
T  43989484 ataat 43989488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 19315935 - 19316081
Alignment:
Q  42 gctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaattacaagcaatcaattatttacaagtctgaataatac 141  Q
    ||||||||| || |||| |||||  ||||  |||||||||||||||||| ||||||| ||||| |   | ||| ||| ||| ||||||  || ||||| |    
T  19315935 gctaattcatgaacgactccattggcttgcctcctattgaactcgacatgagagttctgaaaactgttaacaaacaactatctacaagcatgtataatgc 19316034  T
Q  142 aacctagttcactactatcgtctagatttgaatgaaagcgatctaca 188  Q
    ||||||| ||||||||||| |||| |||||| | |||| ||||||||    
T  19316035 aacctagctcactactatcatctacatttgacttaaagtgatctaca 19316081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 43813198 - 43813264
Alignment:
Q  24 tgagatggagctaccctagctaattcacgagcgaccccattaacttgtttcctattgaactcgacat 90  Q
    |||||||| ||||||||| |||||||| || |||||||||| |||||| | ||||||||||||||||    
T  43813198 tgagatggggctaccctaactaattcatgaacgaccccattgacttgtctgctattgaactcgacat 43813264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 1394191 - 1394129
Alignment:
Q  42 gctaattcacgagcgaccccattaacttgtttcctattgaactcgacataagagttcagaaaa 104  Q
    ||||||||| || ||||||||||| ||||  |||||||||||||||||| ||||||| |||||    
T  1394191 gctaattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttctgaaaa 1394129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 49407130 - 49407175
Alignment:
Q  52 gagcgaccccattaacttgtttcctattgaactcgacataagagtt 97  Q
    ||||||||| ||| ||||| ||||||||||||| ||||||||||||    
T  49407130 gagcgaccctatttacttgcttcctattgaacttgacataagagtt 49407175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 9633111 - 9633063
Alignment:
Q  55 cgaccccattaacttgtttcctattgaactcgacataagagttcagaaa 103  Q
    |||||||||| |||||  |||||||||||||||||| ||||||| ||||    
T  9633111 cgaccccattcacttgcctcctattgaactcgacatgagagttctgaaa 9633063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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