View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8313_low_18 (Length: 315)
Name: NF8313_low_18
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 2624018 - 2623747
Alignment:
| Q |
19 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2624018 |
atttctcagattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttg |
2623919 |
T |
|
| Q |
119 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2623918 |
accaccactaagttgaactcctctgtcaccacacaatgtgtcatatccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
2623819 |
T |
|
| Q |
219 |
ataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2623818 |
ataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
2623747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 2592474 - 2592203
Alignment:
| Q |
19 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2592474 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttg |
2592375 |
T |
|
| Q |
119 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2592374 |
accaccactaagttgaactcctctatcaccacacagtgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
2592275 |
T |
|
| Q |
219 |
ataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
290 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
2592274 |
ataatttcactttcatcaaccttatcatcatatgatccatatgcaatattttctttgatggtaccactaaac |
2592203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 2596355 - 2596626
Alignment:
| Q |
19 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2596355 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttg |
2596454 |
T |
|
| Q |
119 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2596455 |
accaccactaagttgaactcctctatcaccacacagtgtatcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctct |
2596554 |
T |
|
| Q |
219 |
ataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
290 |
Q |
| |
|
||||| |||||||||||||| | |||| |||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2596555 |
ataatctcactctcatcaactttatcatcatatgctccatatacaatattttcttttatggtaccaccaaac |
2596626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 2440528 - 2440257
Alignment:
| Q |
19 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440528 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttg |
2440429 |
T |
|
| Q |
119 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2440428 |
accaccactaagttgaactcctctatcaccacacagtgtatcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctct |
2440329 |
T |
|
| Q |
219 |
ataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
290 |
Q |
| |
|
||||| |||||||||||||| | |||| |||||| ||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2440328 |
ataatctcactctcatcaactttatcatcatatgctccatatacaatattttctcttatggtaccaccaaac |
2440257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 2568796 - 2569067
Alignment:
| Q |
19 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2568796 |
atttctcagattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttg |
2568895 |
T |
|
| Q |
119 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
2568896 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatataaaatcatgagcacttgcagcctttgatgcctct |
2568995 |
T |
|
| Q |
219 |
ataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
290 |
Q |
| |
|
|||||||||||||||||||||| |||| | || | |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
2568996 |
ataatttcactctcatcaaccttatcatcgtaagctccatatgcaatattttcccttatggtaccactaaac |
2569067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 2672171 - 2672442
Alignment:
| Q |
19 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2672171 |
atttctcagattgactatcaagtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttg |
2672270 |
T |
|
| Q |
119 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
2672271 |
accaccactaagttgaactcctctgtcaccacacaaagtatcataaccatcttttaagcttgatataaaatcatgagcatttgaagcctttgatgcctct |
2672370 |
T |
|
| Q |
219 |
ataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
290 |
Q |
| |
|
||||| ||||||||||||||| |||| |||| | |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
2672371 |
ataatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaac |
2672442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 2641011 - 2641282
Alignment:
| Q |
19 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2641011 |
atttctctgattgactatcaagtgcacttgttgcttcatccaaaagtaacacctttggattcttcaatatagctctagctattgcaatcctttgtttttg |
2641110 |
T |
|
| Q |
119 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2641111 |
accaccactaagttgaactcctctatcaccacacaatgtatcataaccatcttgtaagcttgatatgaaatcatgagcatttgcagcctttgatgcctga |
2641210 |
T |
|
| Q |
219 |
ataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
290 |
Q |
| |
|
||||| |||||||||||||| | |||| |||| | ||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
2641211 |
ataatctcactctcatcaactttatcatcataggctccgtatgcaatattttcccttatggtaccaccaaac |
2641282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 2451248 - 2450982
Alignment:
| Q |
21 |
ttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
2451248 |
ttctctgattgactatcaagtgcacttgttgcttcatccaaaagcaacacctttggattcttcaatatagctctagctattgcaatcctttgcttttgac |
2451149 |
T |
|
| Q |
121 |
caccactaagttgaactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctat |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
2451148 |
caccagaaagttgaactcctctatcaccacacaatgtctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctat |
2451049 |
T |
|
| Q |
221 |
aatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaac |
290 |
Q |
| |
|
||| |||||||||||||||| || |||||| ||||||||||||||| || ||||||||||||||||| |
|
|
| T |
2451048 |
aatctcactctcatcaaccttat---catatgctccatatgcaatattctcccttatggtaccaccaaac |
2450982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 17870222 - 17870408
Alignment:
| Q |
34 |
tatcaagtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttg |
133 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| | ||||||||| || || |||||||||||||| || ||||||||||| || || |||||| |
|
|
| T |
17870222 |
tatcaagtgcacttgttgcttcatctagaagcaacacctttggattcttcaacatggctctagctattgctatcctttgtttttgcccccctgaaagttg |
17870321 |
T |
|
| Q |
134 |
aactcctctatcaccacacaatgtatcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctat |
220 |
Q |
| |
|
|||||| | || |||||| |||| ||||| |||||||| || |||| ||||||||||||||||| || | ||||||||||||| |
|
|
| T |
17870322 |
cactcctttgtccccacaccatgtctcatacccatctttcaaacttgcaatgaaatcatgagcattggctactcttgatgcctctat |
17870408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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