View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_low_2 (Length: 727)
Name: NF8313_low_2
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 664; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 1 - 709
Target Start/End: Original strand, 7012629 - 7013337
Alignment:
| Q |
1 |
atctcaatagaatacatgacaacaaactctacaaattgcaatacagcttgcactccatgtcaaaatttccaagctcccaaagtctgtatcagaatgtctt |
100 |
Q |
| |
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|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7012629 |
atctcaatagcatacatgacaa---actccacaaattgcaatacagcttgcactccatgtcaaaatttccaagctcccaaagtctgtatcagaatgtctt |
7012725 |
T |
|
| Q |
101 |
ttactgaaatttcacaatcaaggacagcttagtaaatcaactttaccccattggaccaaagtctatataaatataaatatggtcccatccgtgacttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7012726 |
ttactgaaatttcacaatcaaggacagcttagtaaatcaactttaccccattggaccaaagtctatataaatataaatatggtcccatccgtgacttcaa |
7012825 |
T |
|
| Q |
201 |
actttgtcacatccttaatattattgttattttctcaaccgataagctcacatgaaaatgttatattattttcctctctt---ctccctagcaactctat |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
7012826 |
actttgtcacatccttaatattattgttattttctcaaccgataagctcacatgaaaatgttacattattttcctctcttcttctccctagcaactctat |
7012925 |
T |
|
| Q |
298 |
ccctgctccttgtctcgtccaccgctgcaagaccagcagccaccactccggagcaaacagcaccgccacctcttccaccagcagctaaagagttcttaga |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7012926 |
ccctgctccttgtctcgtccaccgctgcaagaccagcagccaccactccggagccaacagcaccgccacctcttacaccagcagctaaagagttcttaga |
7013025 |
T |
|
| Q |
398 |
atcacacaacaaagcaagagctgaagtaggtgttgagccacttcaatggagcgagaagctagcaaaagacacaagcttactagtccgttaccaaaggaac |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7013026 |
atcacacaacaaagcaagagctgaagtaggtgttgagccacttcaatggagcgagaagctagcaaaagacacaagcttactagtccgttaccaaaggaac |
7013125 |
T |
|
| Q |
498 |
aaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctttgggctggttccgccgcggctgttacaccaagcaaagcggtgg |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7013126 |
aaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctttgggctggttccgccgcggctgttacaccaagcaaagcggtgg |
7013225 |
T |
|
| Q |
598 |
aggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtggaagaaatc |
697 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7013226 |
aggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtggaagaaatc |
7013325 |
T |
|
| Q |
698 |
agcacaacttgg |
709 |
Q |
| |
|
|||||||||||| |
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| T |
7013326 |
agcacaacttgg |
7013337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 355 - 558
Target Start/End: Original strand, 7006599 - 7006802
Alignment:
| Q |
355 |
cagcaccgccacctcttccaccagcagctaaagagttcttagaatcacacaacaaagcaagagctgaagtaggtgttgagccacttcaatggagcgagaa |
454 |
Q |
| |
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||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
7006599 |
cagcaccaccatctcttccaccagcagccaaagagttcttagaatctcacaacaaagcatgagctgaagtaggtgttgagccacttcaatggagtgagaa |
7006698 |
T |
|
| Q |
455 |
gctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctt |
554 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | || ||| |||||||||| || |||||||||||||||||| |
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| T |
7006699 |
tctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgtggtctcgccaacctaacagctagtaaatacggcggtaaccagctt |
7006798 |
T |
|
| Q |
555 |
tggg |
558 |
Q |
| |
|
|||| |
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|
| T |
7006799 |
tggg |
7006802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 7006466 - 7006595
Alignment:
| Q |
171 |
atataaatatggtcccatccgtgacttcaaactttgtcacatccttaatattattgttattttctcaaccgataagctcacatgaaaatgttatattatt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||||| |||||| |
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| T |
7006466 |
atataaatatggtcccatccgtgacttcaa-ctttgtcacatccttaaaattattgttactttttcaac------------atgaaaatgttacattatt |
7006552 |
T |
|
| Q |
271 |
ttcctctcttctccctagcaactctatccctgctccttgtctc |
313 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
7006553 |
ttcctctcttttccctagcaactctatccctgctcgttgtctc |
7006595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 709
Target Start/End: Original strand, 7006846 - 7006953
Alignment:
| Q |
602 |
gtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatga---atgtggtgtttatacacaggttgtgtggaagaaatca |
698 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||| |||||||| ||||||||||| ||| || ||||| ||||||||||||||||||||| |
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| T |
7006846 |
gtgggtgaggaagaaagagctttacattcatgtgaatgatacttgt---gtgaatcatgagttctgtcatgcttataggcaggttgtgtggaagaaatca |
7006942 |
T |
|
| Q |
699 |
gcacaacttgg |
709 |
Q |
| |
|
| ||||||||| |
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|
| T |
7006943 |
gtacaacttgg |
7006953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 355 - 496
Target Start/End: Complemental strand, 7695011 - 7694870
Alignment:
| Q |
355 |
cagcaccgccacctcttccaccagcagctaaagagttcttagaatcacacaacaaagcaagagctgaagtaggtgttgagccacttcaatggagcgagaa |
454 |
Q |
| |
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||||||| ||||||||||||||| |||| ||| |||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
7695011 |
cagcaccaccacctcttccaccaccagccaaaaagttcttagaatagaacaacaaagatagagctgaagtaggtgttgacccactttaatggggcgagaa |
7694912 |
T |
|
| Q |
455 |
gctagcaaaagacacaagcttactagtccgttaccaaaggaa |
496 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||| |
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| T |
7694911 |
gctagcaaaagacacatgcttactagtcaattaccaaaggaa |
7694870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 690
Target Start/End: Complemental strand, 33556516 - 33556423
Alignment:
| Q |
597 |
gaggagtgggtgaaggagaaagagttttacattcat-gtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtgga |
690 |
Q |
| |
|
||||| |||||||||||||| |||||||| | |||| |||| |||||| ||||| ||||||||| |||||||||||||| || ||||| |||| |
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| T |
33556516 |
gaggaatgggtgaaggagaaggagttttataatcatagtga-taatacatgtgttgtgaatcataggtgtggtgtttatactcaagttgtttgga |
33556423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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