View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_low_22 (Length: 272)
Name: NF8313_low_22
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 8909505 - 8909746
Alignment:
| Q |
13 |
gagaagaagcagacaaggaaaatggtagtgnnnnnnn-ggccacggaatcactcttatcctttgctataaccatcaaattttctctgaccaaggaaacat |
111 |
Q |
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| T |
8909505 |
gagaagaagcagacaaggaaaatggtagtgaaaaaaaaggccacggaatcactgttatcctttgctataaccatcaaattttctctaaccaagaaaacat |
8909604 |
T |
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| Q |
112 |
aagaagtagagaacagaaaacattactaggagaaagctcaaaatgtaagtatatatacatgttttgaaacacacttcgataaagtgattatataactagc |
211 |
Q |
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| T |
8909605 |
aagaagtagagaatagaaaacattactaggagaaagctcaaaatgtaag--tatatacatgttttgaaacacactttgataaagtgattatataactagc |
8909702 |
T |
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| Q |
212 |
tttattccatttcggaaatgtaaagtgctaaagatattgttttt |
255 |
Q |
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| T |
8909703 |
tttattccatttcagaaatgtaaagtgctaaagatattgttttt |
8909746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 40882454 - 40882305
Alignment:
| Q |
104 |
ggaaacataagaagtagagaacagaaaacattactaggagaaagctcaaaatgtaagtatatatacatgttttgaaacacacttcgataaagtgattata |
203 |
Q |
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| T |
40882454 |
ggaaacataagaagtagagaatagaaaacattactaggagaaagctcaaaatgtaagtatata--catgttttgaaacacactttgataaagtgattata |
40882357 |
T |
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| Q |
204 |
taactagctttattccatttcggaaatgtaaagtgctaaagatattgttttt |
255 |
Q |
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| T |
40882356 |
taactagctttattccatttcggaaatgtaaagtgctaaagatattgttttt |
40882305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 40882497 - 40882468
Alignment:
| Q |
13 |
gagaagaagcagacaaggaaaatggtagtg |
42 |
Q |
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| T |
40882497 |
gagaagaagcagacaaggaaaatggtagtg |
40882468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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