View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_low_28 (Length: 219)
Name: NF8313_low_28
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 41796729 - 41796530
Alignment:
| Q |
1 |
ctactgtgatgcagctattgtgttgtgagttagtcctacccaatttggaagtatcctcaaagatctcacccatattgatgtttgtctctgcaaaagggat |
100 |
Q |
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| T |
41796729 |
ctactgtgatgtagctattgtgttgtgagttagtcctacccaatttggaagtatcctcaaagatctcacccatattgatgttgctctctgcaaaagggat |
41796630 |
T |
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| Q |
101 |
atatcaaactaagtccctttcagtgtccaaatgaattgacttcactttagtttagaggatcacttgggattcatattctaaatgatgcatatgtcaaggc |
200 |
Q |
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| T |
41796629 |
atatcaaactaagtccctttcagtgtccaaatgaattgacttcactttagtttagaggatcacttgggattcatattctaaatgatgcatatgtcaaggc |
41796530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 41792982 - 41792856
Alignment:
| Q |
42 |
aatttggaagtatcctcaaagatctcacccatattgatgtttgtctctgcaaaagggatatatcaaactaagtccctttcagtgtccaaatgaattgact |
141 |
Q |
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| T |
41792982 |
aatttggaagtatcctcaaagatctcatccacattgatgttgctctctacaaaagtgatagatcaaacaaagtccctttcaatttctaaatgatttgact |
41792883 |
T |
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| Q |
142 |
tcactttagtttagaggatcacttggg |
168 |
Q |
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| T |
41792882 |
tcacttttgtttagaggatcacttggg |
41792856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 41762723 - 41762568
Alignment:
| Q |
32 |
agtcctacccaatttggaagtatcctcaaagatctcacccatattgatgtttgtctctgcaaaagggatatatcaaactaagtccctttcagtgtccaaa |
131 |
Q |
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| T |
41762723 |
agtcccaccgaatttaaaagtttcctctaagatctcatccacattgatgttgctatctacaaaagggaaagatcaaactaagtccctttcaatttcaaaa |
41762624 |
T |
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| Q |
132 |
tgaattgacttcactttagtttagaggatcacttgggattcatattctaaatgatg |
187 |
Q |
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| T |
41762623 |
taaattgacttcactttagtttagaggatcacttgggatttttcctctaaatgatg |
41762568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 41790049 - 41789961
Alignment:
| Q |
23 |
ttgtgagttagtcctacccaatttggaagtatcctcaaagatctcacccatattgatgtttgtctctgcaaaagggatatatcaaacta |
111 |
Q |
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| T |
41790049 |
ttgtgagtaagtcccacgaaatttggatgtatcctctaagatctcacccacattgatgttgctctctacaaaagggaaagatcaaacta |
41789961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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