View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_low_3 (Length: 582)
Name: NF8313_low_3
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_low_3 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 184 - 566
Target Start/End: Complemental strand, 7246474 - 7246092
Alignment:
| Q |
184 |
tctccttgaacaacaacagcagcagcataaactcaccttcttctttccctttctctacttcatccatggcttgtcatgatcagtcacaatctttttcaca |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7246474 |
tctccttgaacaacaacagcagcagcataaactcaccttcttctttccctttctctacttcatccatggcttgtcatgatcagtcacaatctttttcaca |
7246375 |
T |
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| Q |
284 |
atcctatcaaaactcttctttaaacccttactattactctcaatcaattacctcttctaaaccacttgatcattctcattttcaaactcaagatgctact |
383 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7246374 |
atcctaccaaaactcttctttaaacccttactattactctcaatcaattacctctactaacccacttgatcattctcattttcaaactcaagatgctact |
7246275 |
T |
|
| Q |
384 |
actcatcacctctttttggactcaacatcttattctcatgatgacaaggactttaggtatgtataaaaccaataaattctaaattgttgtttcagttacg |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7246274 |
actcatcacctctttttggactcaacatcttattctcaggatgacaaggactttaggtatgtataaaaccaataaattctaaattgttttttcagttacg |
7246175 |
T |
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| Q |
484 |
ctgccaacttttatatttatatctaatgcagttgaaattgcagttgtgataccgttatagagacctctaaatatatttatatt |
566 |
Q |
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| T |
7246174 |
ctgccaacttttatatttatatctaatgcggttgaaattgcagttgtcataccgttatagagacctctaaatatatttatatt |
7246092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 7246650 - 7246532
Alignment:
| Q |
8 |
agatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtg |
107 |
Q |
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| T |
7246650 |
agatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtg |
7246551 |
T |
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| Q |
108 |
gaactagtagtttcttctt |
126 |
Q |
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| T |
7246550 |
gaactagtagtttcttctt |
7246532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 13137278 - 13137222
Alignment:
| Q |
54 |
aagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
110 |
Q |
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| T |
13137278 |
aagtattgtgaacgtcacatgcacagaggtcgaaatcgttcaagaaagcttgtggaa |
13137222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 52051973 - 52052075
Alignment:
| Q |
8 |
agatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtg |
107 |
Q |
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|||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||| |
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| T |
52051973 |
agatggaaagaaatggagatgttcaaaagaagcatatccagattcaaagtactgtgaaaggcacatgcatagagggaaaaaccgttcaagaaagcctgtg |
52052072 |
T |
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| Q |
108 |
gaa |
110 |
Q |
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||| |
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| T |
52052073 |
gaa |
52052075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 554
Target Start/End: Complemental strand, 22482719 - 22482671
Alignment:
| Q |
506 |
ctaatgcagttgaaattgcagttgtgataccgttatagagacctctaaa |
554 |
Q |
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| T |
22482719 |
ctaatgcagttgcaattgcggttgtgatggcgttataaagacctctaaa |
22482671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 18199903 - 18199801
Alignment:
| Q |
8 |
agatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtg |
107 |
Q |
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|||||| || ||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| ||||| | |||||||||||||||||||||| |
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| T |
18199903 |
agatggaaaaaaatggagatgctcaaaagaagcatatccagattctaaatactgtgaaagacacatgcatagaggaaaaaaccgttcaagaaagcctgtg |
18199804 |
T |
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| Q |
108 |
gaa |
110 |
Q |
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| T |
18199803 |
gaa |
18199801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 42091957 - 42092016
Alignment:
| Q |
53 |
aaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
112 |
Q |
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| T |
42091957 |
aaagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaact |
42092016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 399100 - 399189
Alignment:
| Q |
21 |
tggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
110 |
Q |
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| T |
399100 |
tggaggtgctcgaaggaagcatacccagactccaagtactgtgagcgccacatgcaccgtggccgcaaccgttcaagaaagcctgtggaa |
399189 |
T |
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