View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8313_low_5 (Length: 569)

Name: NF8313_low_5
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8313_low_5
NF8313_low_5
[»] chr1 (3 HSPs)
chr1 (20-505)||(7560948-7561415)
chr1 (45-167)||(7555450-7555572)
chr1 (124-167)||(9581951-9581994)
[»] chr6 (2 HSPs)
chr6 (365-484)||(9410862-9410985)
chr6 (47-103)||(9412443-9412499)
[»] chr2 (1 HSPs)
chr2 (124-166)||(44575182-44575224)
[»] chr4 (3 HSPs)
chr4 (51-88)||(566758-566795)
chr4 (126-170)||(2525771-2525815)
chr4 (126-170)||(6007679-6007723)
[»] chr7 (1 HSPs)
chr7 (126-170)||(15091356-15091400)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Complemental strand, 7561415 - 7560948
Alignment:
Q  20 aagaacaagaacaacaatttgtgctgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561415 aagaacaagaacaacaatttgtgctgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgt 7561316  T
Q  120 tttgagtctctctccgtcgtctctaaacagtttctctctatcaccaacagtttctcgctatttatgcagtccacaaaagttgaatatatggactccatat 219  Q
    || ||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561315 ttagagtctct-------------aaacagtttctctctatcaccaacagtttctcgctatttatgcagtccacaaaagttgaatatatggactccatat 7561229  T
Q  220 nnnnnnnntcattatacgatattttgcgtcaaacgaaatcatcactatgcgtgcatgactaaggacggatttgttgtactttgtgcttttgtcctttaga 319  Q
            |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561228 aaaaaaa-tcattatacgatattttgtgtcaaacgaaatcatcactgtgcgtgcatgactaaggacggatttgttgtactttgtgcttttgtcctttaga 7561130  T
Q  320 ttctaattagtattttgttatcattcgttgtccggcagtggtgatgtttaaatatgctgttgatct-agttggtggaatcttatttatgttattatagta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||     |||||    
T  7561129 ttctaattagtattttgttatcattcgttgtccggcagtggtgatgtttaaatatgttgttgatctaagttggtggattcttatttatgt-----tagta 7561035  T
Q  419 tgttagactcatttttaaggtgtttattaatctagtctatgaactaaattgaagtttatgattcttattctgaattaggggaacttg 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561034 tgttagactcatttttaaggtgtttattaatctagtctatgaactaaattgaagtttatgattcttattctgaattaggggaacttg 7560948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 7555572 - 7555450
Alignment:
Q  45 gctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgttttgagtctctctccgtcgtctcta 144  Q
    |||| |||||||||||| ||||| |||||| ||| ||||||||| || |||||||| || || ||  |||| | |||  || |||||||| |||| || |    
T  7555572 gctgctttttatttacccgatgaatgttggcaacttgtcttcaaatttctcaacaacggtgacgacaaccgttatttgaagactctctccctcgtttcca 7555473  T
Q  145 aacagtttctctctatcaccaac 167  Q
    |||||||||||||||||||||||    
T  7555472 aacagtttctctctatcaccaac 7555450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 9581994 - 9581951
Alignment:
Q  124 agtctctctccgtcgtctctaaacagtttctctctatcaccaac 167  Q
    ||||||| || |||||||| ||||||||||||||||||||||||    
T  9581994 agtctctttctgtcgtctccaaacagtttctctctatcaccaac 9581951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 9410985 - 9410862
Alignment:
Q  365 gtttaaatatgctgttgatcta-gttggtggaatcttatt--tatgttattatagtatgttagactcatttttaaggtgt-ttattaatctagtctatga 460  Q
    ||||||||||| |||||||||| ||||||| |||||| ||  ||| || ||||||||||||||| |||||||  || | | || ||||| |  |||||||    
T  9410985 gtttaaatatgttgttgatctaagttggtgtaatcttcttcatatatttttatagtatgttagattcattttgtagttttgtttttaatgttttctatga 9410886  T
Q  461 actaaattgaagtttatgattctt 484  Q
    ||||||||||||||||||| ||||    
T  9410885 actaaattgaagtttatgaatctt 9410862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 9412499 - 9412443
Alignment:
Q  47 tgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatgg 103  Q
    ||||||||||||||||||||| |||||| ||  | ||||||| ||||||||| ||||    
T  9412499 tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacgatgg 9412443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 44575182 - 44575224
Alignment:
Q  124 agtctctctccgtcgtctctaaacagtttctctctatcaccaa 166  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  44575182 agtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 566795 - 566758
Alignment:
Q  51 ttttatttacctgatgactgttggaaacatgtcttcaa 88  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  566795 ttttatttacctgatgactgttgggaacgtgtcttcaa 566758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 2525815 - 2525771
Alignment:
Q  126 tctctctccgtcgtctctaaacagtttctctctatcaccaacagt 170  Q
    ||||||||| ||||||| ||||||||||| || ||||||||||||    
T  2525815 tctctctccctcgtctcaaaacagtttctgtccatcaccaacagt 2525771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 6007723 - 6007679
Alignment:
Q  126 tctctctccgtcgtctctaaacagtttctctctatcaccaacagt 170  Q
    ||||||||| ||||||| |||||||| ||||| ||||||||||||    
T  6007723 tctctctccctcgtctcgaaacagttcctctccatcaccaacagt 6007679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 15091356 - 15091400
Alignment:
Q  126 tctctctccgtcgtctctaaacagtttctctctatcaccaacagt 170  Q
    ||||||||| ||||||| |||||||| ||||| ||||||||||||    
T  15091356 tctctctccctcgtctccaaacagttcctctccatcaccaacagt 15091400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University