View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8313_low_6 (Length: 505)
Name: NF8313_low_6
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8313_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Complemental strand, 32882424 - 32881962
Alignment:
| Q |
20 |
tggtggtggaggaggaggcatggtgaagtcagtgaacggagacggaggtttcaccggtgaagcttggtcggaaatagcggagacgcagcagaaagggtgc |
119 |
Q |
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| T |
32882424 |
tggtggtggaggaggaggcatggtgaagtcagtgaacggagacggaggtttcaccggcgaagcttggtcggaaatagcggagacgcagcagaaaggatgc |
32882325 |
T |
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| Q |
120 |
atgatattagtgtttgaattggaggaaggtgacgtggcggcggtggttgacggcggtgattgagagaagcttcatgggcccttaaggcgatcactgtcag |
219 |
Q |
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| T |
32882324 |
atgatattagtgtttgaattggaggaaggtgacgtggcgacggtgattgacggcggtgattgagagaagcttcatgggcccttaaggcgatcactgtcag |
32882225 |
T |
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| Q |
220 |
aaaat-aagaagatggaacggaacggaggcgggaagcggaatatgcgtgaggcgagtttataagaaagaaaataaaaacggttacgtctaggtagcagat |
318 |
Q |
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| T |
32882224 |
aaaataaagaagaaggaacggaacggaggcgggaagcggaatatgcgtgaggcgagtttataagaaagaaaataaaaacggttacgtctaggtagcagat |
32882125 |
T |
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| Q |
319 |
ttatgaaaaatgtaaaataaattgaattaatgtgaatggaaggacaaagacaaagtcttggtcaaaacacatactatactatatgaattttaattacatt |
418 |
Q |
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| T |
32882124 |
ttatgaaaaatgtaaaataaattgaattaatgtgaatggaaggacaaagacaaagtcttggtcaaaaca-----tatactatatgaattttaattacatt |
32882030 |
T |
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| Q |
419 |
acatgaagtatatggattaattttgagatggagtgttgggagagaaaagaaaaggtaacggaagtagt |
486 |
Q |
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| T |
32882029 |
acatgaagtatatggattaattttgagatggagtgttgggagagaaaagaaaaggtaacggaagtagt |
32881962 |
T |
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