View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8313_low_9 (Length: 421)

Name: NF8313_low_9
Description: NF8313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8313_low_9
NF8313_low_9
[»] chr5 (4 HSPs)
chr5 (103-273)||(14214492-14214662)
chr5 (1-103)||(14214418-14214521)
chr5 (352-404)||(14214752-14214804)
chr5 (111-182)||(963282-963353)
[»] chr7 (4 HSPs)
chr7 (111-186)||(7783576-7783651)
chr7 (117-189)||(30926687-30926759)
chr7 (117-189)||(26028432-26028504)
chr7 (138-187)||(30918397-30918446)
[»] chr2 (1 HSPs)
chr2 (112-168)||(15434615-15434671)
[»] chr3 (1 HSPs)
chr3 (13-51)||(11603022-11603060)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 103 - 273
Target Start/End: Original strand, 14214492 - 14214662
Alignment:
Q  103 agaattttctactgatgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattccttaacttccaaatga 202  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||| |||||    
T  14214492 agaatttgctactcatgcttcctaaacataaattgttgaatatgaaaagaaacacataaataaaggttcatcggttgatgattcattgacttccgaatga 14214591  T
Q  203 ttctggccgctcctaatatgcccgaagatgggttaagctattgtctccactccttgccccattttctcacc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14214592 ttctggccgctcctaatatgcccgaagatgggttaagctattgtctccactccttgccccattttctcacc 14214662  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14214418 - 14214521
Alignment:
Q  1 aataaattgtactcaaaggatattaaaagttacatgatcaaacaattaca-agaactttaatgacctaacctagagaattttctactcatgcatcctaaa 99  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  14214418 aataaattgtattcaaaggatattaaaagttacatgatccaacaattatagagaaccttaatgacctaacctagagaatttgctactcatgcttcctaaa 14214517  T
Q  100 cata 103  Q
    ||||    
T  14214518 cata 14214521  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 14214752 - 14214804
Alignment:
Q  352 caaaactcaactaaatacaataccaaacttgctactttaagtctaaaatgact 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14214752 caaaactcaactaaatacaataccaaacttgctactttaagtctaaaatgact 14214804  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 963282 - 963353
Alignment:
Q  111 ctactgatgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatg 182  Q
    ||||| || ||| ||||||||||| | ||||||||||||||||||||||||  ||| | |||||||||||||    
T  963282 ctactcatactttctaaacataaactattgaatatgaaaagaaaaacataagcaaaagatcattggttgatg 963353  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 7783576 - 7783651
Alignment:
Q  111 ctactgatgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattc 186  Q
    ||||| ||||||| |||| ||||||| |||||||||||||| |||||||||||||||| || | | ||||||||||    
T  7783576 ctactcatgcttcgtaaatataaattattgaatatgaaaaggaaaacataaataaaggatcgtcgattgatgattc 7783651  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 30926687 - 30926759
Alignment:
Q  117 atgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattcctt 189  Q
    ||||||||||||||||||   |||||||||||||| |||| ||||||||| | ||| | ||||||||||||||    
T  30926687 atgcttcctaaacataaacaattgaatatgaaaaggaaaagataaataaatgatcacttgttgatgattcctt 30926759  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 26028432 - 26028504
Alignment:
Q  117 atgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattcctt 189  Q
    |||||| ||||||||||| | ||||| |||||||| |||||||| ||||| | |||  |||||||||||||||    
T  26028432 atgcttgctaaacataaactattgaagatgaaaaggaaaacatagataaatgatcaccggttgatgattcctt 26028504  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 30918397 - 30918446
Alignment:
Q  138 ttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattcc 187  Q
    |||||||||||||| |||||||||||||| | |||  |||||||||||||    
T  30918397 ttgaatatgaaaaggaaaacataaataaaagatcaccggttgatgattcc 30918446  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 15434615 - 15434671
Alignment:
Q  112 tactgatgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaagg 168  Q
    |||| |||||||||||||||||| | ||| |||||||||| ||||||||||| ||||    
T  15434615 tactcatgcttcctaaacataaagtattgcatatgaaaaggaaaacataaatgaagg 15434671  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 11603060 - 11603022
Alignment:
Q  13 tcaaaggatattaaaagttacatgatcaaacaattacaa 51  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  11603060 tcaaaggataataaatgttacatgatcaaacaattacaa 11603022  T

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