View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8314_high_1 (Length: 588)
Name: NF8314_high_1
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8314_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 19 - 575
Target Start/End: Complemental strand, 39554658 - 39554102
Alignment:
| Q |
19 |
cacccttctaccttattcaccaaacaaggcaaatactcaactactagtagtgaaacattctcctaatctagtccccaaaatgtgtattggaaaagtagaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39554658 |
cacccttctaccttattcaccaaacaaggcaaatactcaactactagtagtgaaacattctcctaatctagtccccaaaatgtgtattggaaaaggagaa |
39554559 |
T |
|
| Q |
119 |
ttcaccgtgaaagttaccaacaaagaaatagtggctgctgctctgccaatgcaagagcactggcttccactatcaaaccttgatttaattcttcccccag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554558 |
ttcaccgtgaaagttaccaacaaagaaatagtggctgctgctctgccaatgcaagagcactggcttccactatcaaaccttgatttaattcttcccccag |
39554459 |
T |
|
| Q |
219 |
ttgatgttggtgtgttcttctgttacaaaaatcctataattactactggcacccaccatagcattgtgggatgtttgaaaaattctttaactgaggctct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554458 |
ttgatgttggtgtgttcttctgttacaaaaatcctataattactactgccacccaccatagcattgtgggatgtttgaaaaattctttaactgaggctct |
39554359 |
T |
|
| Q |
319 |
tgtttcttattatgcctttgctggtgaagtgatgactaactccatgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagctttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554358 |
tgtttcttattatgcctttgctggtgaagtgatgactaactccatgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagctttt |
39554259 |
T |
|
| Q |
419 |
gctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcagg |
518 |
Q |
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| T |
39554258 |
gctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcagg |
39554159 |
T |
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| Q |
519 |
taaaatattattcatttaaaaatcaatgcaacatgtctacaaatttattagtattat |
575 |
Q |
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| T |
39554158 |
taaaatattattcatttaaaaatcaatgcaacatgtctacaaatttattagtattat |
39554102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 68 - 519
Target Start/End: Complemental strand, 39545295 - 39544844
Alignment:
| Q |
68 |
gtgaaacattctcctaatctagtccccaaaatgtgtattggaaaagtagaattcaccgtgaaagttaccaacaaagaaatagtggctgctgctctgccaa |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39545295 |
gtgaaacattctcctaatctagtccccaaaatgtgtattggaaaaggagaattcaccgtgaaagttaccaacaaagaaatagtggctgctgctctgccaa |
39545196 |
T |
|
| Q |
168 |
tgcaagagcactggcttccactatcaaaccttgatttaattcttcccccagttgatgttggtgtgttcttctgttacaaaaatcctataattactactgg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39545195 |
tgcaagagcactggcttccactatcaaaccttgatttaattcttcccccagttgatgttggtgtgttcttctgttacaaaaatcctataattactactgc |
39545096 |
T |
|
| Q |
268 |
cacccaccatagcattgtgggatgtttgaaaaattctttaactgaggctcttgtttcttattatgcctttgctggtgaagtgatgactaactccatgggt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39545095 |
cacccaccatagcattgtgggatgtttgaaaaattctttaactgaggctcttgtttcttattatgcctttgctggtgaagtgatgactaactccatgggt |
39544996 |
T |
|
| Q |
368 |
gaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactg |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544995 |
gaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactg |
39544896 |
T |
|
| Q |
468 |
ttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggt |
519 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
39544895 |
ttgaagggaagcttgttccaaagaagaaacatggtgtgcttgctgctcaggt |
39544844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 165 - 519
Target Start/End: Complemental strand, 39587632 - 39587275
Alignment:
| Q |
165 |
caatgcaagagcactggcttccactatcaaaccttgatttaattcttcccccagttgatgttggtgtgttcttctgttacaaaaatcctataattactac |
264 |
Q |
| |
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|||||||||| || |||| |||||||||| ||||||||| | |||||||| ||| | ||||||||||||| || |||||||||||||| ||||||| |
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| T |
39587632 |
caatgcaagaacataggctagcactatcaaatcttgatttactacttccccctgttagtattggtgtgttcttttgctacaaaaatcctatgattactat |
39587533 |
T |
|
| Q |
265 |
tggcacccaccatagca---ttgtgggatgtttgaaaaattctttaactgaggctcttgtttcttattatgcctttgctggtgaagtgatgactaactcc |
361 |
Q |
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||||||| | ||| || ||||||| || ||||||||||| ||| |||| |||||||||||||| || | |||||||||||| || | ||||||||| |
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| T |
39587532 |
tggcaccaccaataacactattgtggggtgcttgaaaaattccttagctgaagctcttgtttcttactacgtatttgctggtgaaatggttactaactcc |
39587433 |
T |
|
| Q |
362 |
atgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatg |
461 |
Q |
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||||||||||||||| |||||||||| || ||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| ||||| | |
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| T |
39587432 |
atgggtgaacctgagctactttgcaataaccgtggtgtggattttgttgaagctgttgctgatgttgagttgcaatctctcgatttgtataagccagagg |
39587333 |
T |
|
| Q |
462 |
aaactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggt |
519 |
Q |
| |
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|||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
39587332 |
aaaccattgaagggaagcttgttccaaagaagaaatatggtgtacttgctgttcaggt |
39587275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 329 - 507
Target Start/End: Complemental strand, 17507221 - 17507043
Alignment:
| Q |
329 |
tatgcctttgctggtgaagtgatgactaactccatgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttg |
428 |
Q |
| |
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||||||||||| |||||||| || | || || |||||||||||||| | ||||| || |||||||| || ||||||||||||||| |||||||||||| |
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| T |
17507221 |
tatgcctttgcaggtgaagttgtgtccaattctgtgggtgaacctgagcttctttgtaataatcgtggtgttgattttgttgaagctgttgctgatgttg |
17507122 |
T |
|
| Q |
429 |
agttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttccaaagaagaaacatggtgtgct |
507 |
Q |
| |
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| | |||| |||||||| ||||| || |||||| |||||||||| || ||||||| |||||||| ||||| ||||| |
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| T |
17507121 |
aacttcaatgcctcaatttttataaccctgatgaatctgttgaaggaaagtttgttcctaagaagaagcatggcgtgct |
17507043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 363 - 507
Target Start/End: Complemental strand, 17484912 - 17484768
Alignment:
| Q |
363 |
tgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatga |
462 |
Q |
| |
|
|||||||||||||| | ||||| || || ||||| || ||||||||||||||| |||||||||||||| | |||| |||||||| ||||| || ||||| |
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| T |
17484912 |
tgggtgaacctgagattctttgtaataaccgtggtgttgattttgttgaagctgttgctgatgttgagcttcaatgcctcaatttttataaccctgatga |
17484813 |
T |
|
| Q |
463 |
aactgttgaagggaaacttgttccaaagaagaaacatggtgtgct |
507 |
Q |
| |
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| |||||||||| || ||||||| |||||||| ||||| ||||| |
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| T |
17484812 |
atctgttgaaggaaagtttgttcctaagaagaagcatggcgtgct |
17484768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 17507380 - 17507292
Alignment:
| Q |
164 |
ccaatgcaagagcactggcttccactatcaaaccttgatttaattcttcccccagttgatgttggtgtgttcttctgttacaaaaatcc |
252 |
Q |
| |
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||||| ||||| || ||||| ||||| || |||||||||||| |||| || |||| ||||||||||||||||| |||||||| ||||| |
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| T |
17507380 |
ccaatacaagaacattggctaccactctctaaccttgatttacttctacctgcagtggatgttggtgtgttcttttgttacaagaatcc |
17507292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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