View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8314_high_11 (Length: 238)

Name: NF8314_high_11
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8314_high_11
NF8314_high_11
[»] chr3 (6 HSPs)
chr3 (3-222)||(51120795-51121014)
chr3 (100-208)||(51113780-51113888)
chr3 (35-208)||(13470666-13470839)
chr3 (35-208)||(51764374-51764547)
chr3 (121-188)||(27005792-27005859)
chr3 (105-159)||(1657292-1657346)
[»] chr8 (9 HSPs)
chr8 (100-208)||(18315272-18315380)
chr8 (34-208)||(34936096-34936270)
chr8 (103-213)||(27922495-27922605)
chr8 (102-213)||(17636402-17636513)
chr8 (100-208)||(32151293-32151401)
chr8 (83-208)||(21235550-21235675)
chr8 (21-213)||(28246215-28246405)
chr8 (122-163)||(17628035-17628076)
chr8 (103-158)||(17643598-17643653)
[»] chr5 (7 HSPs)
chr5 (36-213)||(32267462-32267636)
chr5 (35-212)||(41889488-41889665)
chr5 (108-213)||(41901542-41901647)
chr5 (108-208)||(37937879-37937979)
chr5 (107-205)||(38267562-38267660)
chr5 (126-208)||(20478107-20478189)
chr5 (158-211)||(12845582-12845635)
[»] chr4 (29 HSPs)
chr4 (34-208)||(553471-553645)
chr4 (98-208)||(1524483-1524593)
chr4 (35-208)||(3438500-3438672)
chr4 (101-212)||(8187091-8187202)
chr4 (100-212)||(1548423-1548535)
chr4 (83-208)||(570343-570468)
chr4 (100-212)||(546901-547013)
chr4 (101-208)||(1513407-1513514)
chr4 (102-205)||(8184031-8184134)
chr4 (97-208)||(1537763-1537874)
chr4 (102-208)||(12121458-12121564)
chr4 (35-208)||(7225817-7225990)
chr4 (42-221)||(55908669-55908848)
chr4 (131-208)||(1508033-1508110)
chr4 (103-207)||(7307853-7307957)
chr4 (35-166)||(1600453-1600584)
chr4 (82-203)||(532186-532307)
chr4 (102-162)||(1519143-1519203)
chr4 (103-194)||(1545779-1545870)
chr4 (100-207)||(1552766-1552873)
chr4 (35-209)||(53761706-53761878)
chr4 (36-173)||(659736-659873)
chr4 (35-207)||(640908-641080)
chr4 (102-166)||(12116576-12116640)
chr4 (101-208)||(1489361-1489468)
chr4 (128-212)||(55505135-55505219)
chr4 (154-212)||(12123423-12123481)
chr4 (156-205)||(558493-558542)
chr4 (150-207)||(566182-566239)
[»] chr6 (24 HSPs)
chr6 (35-205)||(6402855-6403025)
chr6 (80-210)||(6394854-6394984)
chr6 (35-208)||(6432153-6432326)
chr6 (21-193)||(6585157-6585329)
chr6 (88-192)||(12102274-12102378)
chr6 (98-208)||(6409998-6410108)
chr6 (35-204)||(6594540-6594709)
chr6 (21-213)||(11936195-11936387)
chr6 (21-213)||(11948175-11948367)
chr6 (79-206)||(14820687-14820814)
chr6 (103-208)||(6423209-6423314)
chr6 (21-208)||(7994102-7994289)
chr6 (98-208)||(6415958-6416068)
chr6 (35-205)||(7119152-7119322)
chr6 (35-205)||(7131630-7131800)
chr6 (99-208)||(9411347-9411456)
chr6 (98-206)||(14818376-14818484)
chr6 (128-208)||(19632431-19632511)
chr6 (107-205)||(14802331-14802429)
chr6 (126-205)||(10579761-10579840)
chr6 (103-166)||(28935083-28935146)
chr6 (80-210)||(6426501-6426631)
chr6 (100-186)||(6589322-6589408)
chr6 (129-205)||(6603230-6603306)
[»] chr2 (3 HSPs)
chr2 (34-208)||(45245018-45245192)
chr2 (35-221)||(1037598-1037784)
chr2 (102-205)||(32785773-32785876)
[»] chr1 (3 HSPs)
chr1 (103-199)||(52082582-52082678)
chr1 (80-210)||(19468478-19468608)
chr1 (103-201)||(52092776-52092874)
[»] chr7 (3 HSPs)
chr7 (35-208)||(15092085-15092258)
chr7 (21-163)||(7977615-7977757)
chr7 (35-208)||(10614585-10614758)
[»] scaffold0295 (1 HSPs)
scaffold0295 (80-201)||(603-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (128-207)||(39177-39256)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 51120795 - 51121014
Alignment:
Q  3 gccatggaatatgtaacaaaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  51120795 gccatggaatatgtaacaaaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatgg 51120894  T
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120895 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt 51120994  T
Q  203 ttgcaattgtctctagaaag 222  Q
    ||||||||||||||||||||    
T  51120995 ttgcaattgtctctagaaag 51121014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 51113780 - 51113888
Alignment:
Q  100 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 199  Q
    ||||||||||||||||| || |||| ||||||||||  |||||||  ||||||  ||||||||||||| ||| ||||| ||||| ||||||||| |||||    
T  51113780 tggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtggg 51113879  T
Q  200 cttttgcaa 208  Q
    |||||||||    
T  51113880 cttttgcaa 51113888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 13470666 - 13470839
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||| ||||||||| ||||| || ||||||||  ||  ||||  || |||||| |  | ||||||||||||||  |||| |||  |||||||||    
T  13470666 gttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgt 13470765  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    ||||||||||  ||||||  ||| ||||| ||| ||| ||| | |||||||||| |||| ||||||||||||||    
T  13470766 tgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaa 13470839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 51764374 - 51764547
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||||||||| ||| ||||| || |||||| |  |||  |||||||||||||| |  | |||||||||||||| |||||  ||  |||||||||    
T  51764374 gttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggtgt 51764473  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    |  |||||||   ||||| |||||||||| ||| ||| ||||  |||||||||| |||| | ||||||||||||    
T  51764474 tagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaa 51764547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 27005792 - 27005859
Alignment:
Q  121 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaaga 188  Q
    |||| ||||||| ||||||||||| ||||||||| ||||| ||  || ||| ||||||||||||||||    
T  27005792 caaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaaga 27005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 1657346 - 1657292
Alignment:
Q  105 tgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttga 159  Q
    ||||||||||||||| |||| ||||||||||| |||||||   ||||||||||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 1657292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 18315272 - 18315380
Alignment:
Q  100 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 199  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||| ||||||| |||||||||||||  ||| ||||| |||||||||||||||||| ||    
T  18315272 tggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtagg 18315371  T
Q  200 cttttgcaa 208  Q
    |||||||||    
T  18315372 cttttgcaa 18315380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 34936096 - 34936270
Alignment:
Q  34 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 133  Q
    ||||||| ||||||||||| |||||||||| ||| ||||| ||| |||||||| |||||| |  ||  |||||| |||||| ||||  ||| | ||||||    
T  34936096 tgttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaaactagaggtg 34936195  T
Q  134 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    ||| |||||||  ||||||||||||||||| ||| ||| ||||  ||| ||||||||||||||||||||||||||    
T  34936196 ttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaa 34936270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 27922605 - 27922495
Alignment:
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||  ||||||||||||  ||| ||| | ||||||||||||||| ||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 27922506  T
Q  203 ttgcaattgtc 213  Q
    ||| |||||||    
T  27922505 ttgaaattgtc 27922495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 17636402 - 17636513
Alignment:
Q  102 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 201  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||| ||||||  | | ||||| |||||||||||||||| | | ||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtcttagact 17636501  T
Q  202 tttgcaattgtc 213  Q
    ||||||||||||    
T  17636502 tttgcaattgtc 17636513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 32151401 - 32151293
Alignment:
Q  100 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 199  Q
    |||||||||||| ||||||  |||  |||||||||| ||||||||   ||||||  |||||||||||| ||| ||||| ||||||||||||||| |||||    
T  32151401 tggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T
Q  200 cttttgcaa 208  Q
    |||||||||    
T  32151301 cttttgcaa 32151293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 21235675 - 21235550
Alignment:
Q  83 tcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatct 182  Q
    |||| |||||||| |  |||| ||||||||||||||| |||| |||||||||||||||||||  ||||| |||||||| | ||| |||| ||| | || |    
T  21235675 tcaaaagtgaaactgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgattt 21235576  T
Q  183 caaagagttgtcgtgggcttttgcaa 208  Q
    ||||||| |||||  |||||||||||    
T  21235575 caaagagctgtcgcaggcttttgcaa 21235550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 28246215 - 28246405
Alignment:
Q  21 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 120  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  ||||||||||| |||| |  |||  | |||||||||||||||     
T  28246215 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgttgttcaagactgaagctacatacattgaactttgaagttcc 28246314  T
Q  121 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtc 213  Q
    |||| ||||||||||| |||||||   ||||||||||||  || ||  ||| |||   ||||||||||||||| | |||||||||||| ||||    
T  28246315 caaactggaggtgttggacttgtcatttacaagagttga--ataaatcactctattggatctcaaagagttgtagcgggcttttgcaactgtc 28246405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 17628035 - 17628076
Alignment:
Q  122 aaattggaggtgttgaacttgtcgcatacaagagttgatgat 163  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  17628035 aaattggaggtgttgaacttgtcacatactagagttgatgat 17628076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 17643598 - 17643653
Alignment:
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttg 158  Q
    ||||||| ||| ||||| ||||||||||| |||||||||||| || ||||||||||    
T  17643598 aatgaacgttggagttcccaaattggaggcgttgaacttgtcacaaacaagagttg 17643653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 32267636 - 32267462
Alignment:
Q  36 ttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgtt 135  Q
    ||||| ||| |||||||||||||||||| ||||||||  ||   ||||||| ||||||||   |   ||||||||||||||||| |||||||||||| ||    
T  32267636 ttttaaggatatgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaactaga---aatgaactttgaagttcccaaattggaggtatt 32267540  T
Q  136 gaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtc 213  Q
    ||||||||| || |||| |||||||||||||  ||| ||| | ||||||||||||||| ||||||||||| |||||||    
T  32267539 gaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtc 32267462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 41889488 - 41889665
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||| |||||||||||||||| | ||||||||  |||| ||||||| |||||| |  | || |||||||||| |||||| ||||||||||||||    
T  41889488 gttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgt 41889587  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 212  Q
    ||||||| ||  |||||| |||||||||||||| ||| |||   ||||||||||||||| | ||||||| | ||||||    
T  41889588 tgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgt 41889665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 41901542 - 41901647
Alignment:
Q  108 actttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 207  Q
    |||||||||||| |||| |||||||||||||||||||  |||||| |||||||||||||  ||| ||| | ||||||||||||||| |||| |||||| |    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  208 attgtc 213  Q
    ||||||    
T  41901642 attgtc 41901647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 37937979 - 37937879
Alignment:
Q  108 actttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 207  Q
    |||||||||||| |||  | ||||||||| ||||| | ||||||||| |||||||| ||| ||| ||||||||||||||||  |||||||||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgca 37937880  T
Q  208 a 208  Q
    |    
T  37937879 a 37937879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 38267562 - 38267660
Alignment:
Q  107 aactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 205  Q
    ||||||||||||| |||  | ||||||||| ||||| | |||||||||||||||||||| | ||| ||||||||||||||||  || ||||||||||||    
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttg 38267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 20478107 - 20478189
Alignment:
Q  126 tggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    |||||||||||||||||||  ||||||  |||||||| |||| | ||| ||| ||||||| || |||| ||||||||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaa 20478189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 12845635 - 12845582
Alignment:
Q  158 gatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattg 211  Q
    |||||||||  |||||||| |||||||||||||||| |||| || |||||||||    
T  12845635 gatgatgaagcactatatgcaatctcaaagagttgttgtggtctattgcaattg 12845582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 553645 - 553471
Alignment:
Q  34 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 133  Q
    ||||||| ||| |||||||||||||||||| |||||||| ||| | ||||||||||||||    | |  | |||||||| ||||||||||| ||||||||    
T  553645 tgttttaaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtg 553546  T
Q  134 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    |||||||||||   |||||||||||||||||||  |||  |||| || ||||||||||||  |||||||||||||    
T  553545 ttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaa 553471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 1524483 - 1524593
Alignment:
Q  98 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 197  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||| | |||||| ||||||||||||| ||| ||| | |||||| ||||||||||||    
T  1524483 catggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtg 1524582  T
Q  198 ggcttttgcaa 208  Q
    |||||||||||    
T  1524583 ggcttttgcaa 1524593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 3438500 - 3438672
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||||||||||||| |||||||| ||||||||  | ||||||| | |||||||   |  || |||||||||||| |||   ||||||||||| |    
T  3438500 gttttaaggagatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtat 3438599  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    ||| |||||| |||||||||||||||||| ||| |||  |||||||||||||||||||| ||||||||||||||    
T  3438600 tgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtgggcttttgcaa 3438672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 8187091 - 8187202
Alignment:
Q  101 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggc 200  Q
    ||||||||||||||| ||  |||| ||||||||||||||||||| |||||||||||||||||| ||| ||| |||| ||| |||||||||||| ||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggc 8187190  T
Q  201 ttttgcaattgt 212  Q
    ||||||| ||||    
T  8187191 ttttgcagttgt 8187202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 1548423 - 1548535
Alignment:
Q  100 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 199  Q
    |||| ||||||||||| ||| |||| ||||||||||||||||||| ||||||||  |||||||||||| |||  |||| ||||||||||||||| |||||    
T  1548423 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 1548522  T
Q  200 cttttgcaattgt 212  Q
    |||||||| ||||    
T  1548523 cttttgcacttgt 1548535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 570468 - 570343
Alignment:
Q  83 tcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatct 182  Q
    |||| |||||||| || |||| |||||||||||||||||||| | |||||||||||||||||  ||||| |||||||| | ||| |||| ||| | || |    
T  570468 tcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgattt 570369  T
Q  183 caaagagttgtcgtgggcttttgcaa 208  Q
    ||||||||||||| ||||||||||||    
T  570368 caaagagttgtcgcgggcttttgcaa 570343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 547013 - 546901
Alignment:
Q  100 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 199  Q
    ||||||||||||||||||||  |||||||||||| |||||||||| | |||||  ||  ||||||||| ||| ||||| ||||||||||||||| |||||    
T  547013 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 546914  T
Q  200 cttttgcaattgt 212  Q
    |||||| ||||||    
T  546913 cttttggaattgt 546901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 1513407 - 1513514
Alignment:
Q  101 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggc 200  Q
    ||||||||||||||||||| |||| | || ||||||||||||||   |||||  ||||||||||||| ||| || |||||||||||| ||||||||||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  201 ttttgcaa 208  Q
    ||||||||    
T  1513507 ttttgcaa 1513514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 8184031 - 8184134
Alignment:
Q  102 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 201  Q
    ||||||||||||||||||  ||| | ||||||||||||||||| ||||||||||||||||||  |  ||| |||| |||||||||||||||| |||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  202 tttg 205  Q
    ||||    
T  8184131 tttg 8184134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 1537763 - 1537874
Alignment:
Q  97 gcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgt 196  Q
    ||||||||||||||||||||||| |||| | || ||||||||||||||  ||||||  ||| ||||  ||| ||| | ||||||||||||| ||||||||    
T  1537763 gcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgt 1537862  T
Q  197 gggcttttgcaa 208  Q
    ||||||||||||    
T  1537863 gggcttttgcaa 1537874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 12121458 - 12121564
Alignment:
Q  102 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 201  Q
    |||||||||||||||||| |||| | || ||||||||||||||  ||||||  ||||||||||||| ||| |  |||||||||||| |||| ||||||||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 12121557  T
Q  202 tttgcaa 208  Q
    |||||||    
T  12121558 tttgcaa 12121564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 7225817 - 7225990
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||||||||||||| |||||||| ||||||||  ||   ||| |||||||||| |  |     |||||||||||||||||| |||||||||| |    
T  7225817 gttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggaggtct 7225916  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    |||||||||| |||||||||||||||||  ||  |||   ||| || |||||||||||| |||| |||||||||    
T  7225917 tgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaa 7225990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 55908669 - 55908848
Alignment:
Q  42 ggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaactt 141  Q
    |||||||||||||  ||||||| ||||| ||  ||   ||||||||||||||||  | | |||| |||||| ||||||   |||| |||||||| |||||    
T  55908669 ggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaactt 55908768  T
Q  142 gtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaa 221  Q
    ||| |||||| | ||||||||||||| ||| ||| | |||||||||| |||| |||||||||| ||| ||| ||| ||||    
T  55908769 gtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaa 55908848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 1508033 - 1508110
Alignment:
Q  131 gtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    |||||||||||||| ||||| |  ||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  1508033 gtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaa 1508110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 7307957 - 7307853
Alignment:
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt 202  Q
    |||||||||| |||||| |||||||||||| |||||||||||  |||||  |||||||||||||  ||||  | | ||||||||||||||| || |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  203 ttgca 207  Q
    |||||    
T  7307857 ttgca 7307853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 1600584 - 1600453
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| |||||| || ||| |||||||| ||||||||  ||   ||||||| | |||| | ||  |||||||||||||||||||| ||| |||||||||    
T  1600584 gttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgt 1600485  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaa 166  Q
    ||||||||||  ||||||| ||||| ||||||    
T  1600484 tgaacttgtcatatacaagggttgacgatgaa 1600453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 532307 - 532186
Alignment:
Q  82 ttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatc 181  Q
    |||||||||||| |  | |||||||||||||||||| | |||  | |||||||||||||||||  ||||||   ||||||||||||| || ||||| | |    
T  532307 ttcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacc 532208  T
Q  182 tcaaagagttgtcgtgggcttt 203  Q
    ||||||| |||||||| |||||    
T  532207 tcaaagaattgtcgtgagcttt 532186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 1519143 - 1519203
Alignment:
Q  102 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatga 162  Q
    |||||||||||||||||| |||| | ||||||||||||||||| |||||||| ||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatga 1519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 1545870 - 1545779
Alignment:
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtc 194  Q
    |||||||||| ||||||  ||| |||||||||||||||||| |  |||||||||||||||||||| ||| ||| ||||  |||||| |||||    
T  1545870 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttatataataacaaagaattgtc 1545779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 1552766 - 1552873
Alignment:
Q  100 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 199  Q
    |||| ||||||||||| ||| |||| |||| |||||||| ||||| |||||||   || ||||||||| |||  |||| || ||||||| ||||||||||    
T  1552766 tggactgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtggg 1552865  T
Q  200 cttttgca 207  Q
    ||||||||    
T  1552866 cttttgca 1552873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 209
Target Start/End: Original strand, 53761706 - 53761878
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||||||||||||||||||| || ||||||||  |||  |||||||||||||| |    |||||||||||||| ||||| |||  | |||| ||    
T  53761706 gttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaagctagaggcgt 53761805  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaat 209  Q
    ||||||||||   ||| | |||| | |||  |||||  | ||| ||||| |||| ||||||||||||||||||||    
T  53761806 tgaacttgtcatttacgaaagttaacgat--aaaacactctgtgatctcgaagaattgtcgtgggcttttgcaat 53761878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 659873 - 659736
Alignment:
Q  36 ttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgtt 135  Q
    ||||| |||||||||||||||||||| | || |||||  || | |||||||||| ||| |  |  | ||| || |||||||||| |||| | ||||||||    
T  659873 ttttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagctacgagtaataaattttgaagttcccaaactagaggtgtt 659774  T
Q  136 gaacttgtcgcatacaagagttgatgatgaaaaactat 173  Q
    ||||||||| |||||||| ||| || |||||| |||||    
T  659773 gaacttgtcacatacaagtgttaataatgaaacactat 659736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 641080 - 640908
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||| |||||||||  ||||||| ||||||||  ||||||||    |||| || |  | ||||||||| |||||| | |  | |||||||||||    
T  641080 gttttaaggatatgttgtaatgttagacatttgaacttagccggttgtgatggagtaaacctacttggaatgaaatttgaactaccaatattggaggtgt 640981  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 207  Q
    ||||||||||  ||||||  ||||||||||||| ||| || || | |||||||| ||| ||||| ||||||||    
T  640980 tgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgca 640908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 12116576 - 12116640
Alignment:
Q  102 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaa 166  Q
    ||||||||||||| ||||  || || ||||||||||||||||| |||||||| ||||||||||||    
T  12116576 gaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatgatgaa 12116640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 1489361 - 1489468
Alignment:
Q  101 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggc 200  Q
    ||||||||||||||||||| |||| | || ||||||||||||||  ||||||  ||| |  | |||| ||| | ||||||||||| | |||| |||||||    
T  1489361 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 1489460  T
Q  201 ttttgcaa 208  Q
    ||||||||    
T  1489461 ttttgcaa 1489468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 55505135 - 55505219
Alignment:
Q  128 gaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 212  Q
    |||||||||||||||||  ||||||  ||||| |||| || ||| ||||| | |||||||| ||||||||| |||||||| ||||    
T  55505135 gaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttgcatttgt 55505219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 12123423 - 12123481
Alignment:
Q  154 agttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 212  Q
    |||||| ||||||  ||| |||| |||| |||| |||||||||||||||||||||||||    
T  12123423 agttgacgatgaagcactttatgcaatcccaaaaagttgtcgtgggcttttgcaattgt 12123481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 558542 - 558493
Alignment:
Q  156 ttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 205  Q
    |||||||||||  |||  |||| |||||||||||||||||||||||||||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttg 558493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 566239 - 566182
Alignment:
Q  150 caagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 207  Q
    |||| ||||||||||||| ||| ||||| |||||||||   |||||||||||||||||    
T  566239 caagcgttgatgatgaaacactctatgtgatctcaaagtactgtcgtgggcttttgca 566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 6403025 - 6402855
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||||||||||||||||||| || |||||||| || || |||||||||||||| |  | |||||| ||||||| ||||| | || | || ||||    
T  6403025 gttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgt 6402926  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 205  Q
    ||||||||||  |||| |  ||||||||||||| ||| ||||| |||||||||| |||| |||||||||||    
T  6402925 tgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttg 6402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 6394984 - 6394854
Alignment:
Q  80 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaa 179  Q
    ||||||| ||||||||  |||||||||||||||| ||||| | |  |||||||||||||||||||  ||||||| |||||||||||||  || | ||| |    
T  6394984 tgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtga 6394885  T
Q  180 tctcaaagagttgtcgtgggcttttgcaatt 210  Q
    ||||||||| |||| ||||||||||||||||    
T  6394884 tctcaaagaattgttgtgggcttttgcaatt 6394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 6432326 - 6432153
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| |||||||||||||  ||| ||| ||||||||  ||  ||||  || |||||| |  |||||||||||||||||||||| |||  || ||||||    
T  6432326 gttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgt 6432227  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    ||||||||||  ||||||| ||||||||||||| ||| ||||| |||| ||||| |||| |||||||| |||||    
T  6432226 tgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaa 6432153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 6585157 - 6585329
Alignment:
Q  21 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 120  Q
    |||||||| ||  ||||||| ||||||||| ||| ||||| || |||||||| || || |||||||||||||| |  | |||||| ||||||  ||||      
T  6585157 aaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagttac 6585256  T
Q  121 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgt 193  Q
    | | |||||||| |||||||||||  ||||||  ||||||||||||| ||| ||||| |||||||||||||||    
T  6585257 ccagttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgt 6585329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 12102378 - 12102274
Alignment:
Q  88 agtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaag 187  Q
    |||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| | ||| |||| ||| | || ||||||    
T  12102378 agtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaag 12102279  T
Q  188 agttg 192  Q
    |||||    
T  12102278 agttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 6410108 - 6409998
Alignment:
Q  98 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 197  Q
    |||||||||||||||||||||| |||  || |||||||||||| |||  ||||||| |||||||||||||  || ||||| |||||||||| |||| ||     
T  6410108 catggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtc 6410009  T
Q  198 ggcttttgcaa 208  Q
    |||||||||||    
T  6410008 ggcttttgcaa 6409998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 6594540 - 6594709
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||||||||| ||| |||| ||| ||| ||||  |||| |||||||||||||| |  |||||||| ||||||  ||||| |||| |||||||||    
T  6594540 gttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgt 6594639  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctttt 204  Q
    || |||||||  |||||   ||||||||||| | ||||  ||| |||||||||| |||| ||||||||||    
T  6594640 tgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggctttt 6594709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 11936195 - 11936387
Alignment:
Q  21 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 120  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  | ||||||||| |||| |  | |  | |||||||||||||||     
T  11936195 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcc 11936294  T
Q  121 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtc 213  Q
    |||| ||||||||||| |||||||   |||||||||||| ||| ||  ||| |||   ||||||||||||||| |||||||||||||| ||||    
T  11936295 caaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtc 11936387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 11948175 - 11948367
Alignment:
Q  21 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 120  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  | ||||||||| |||| |  | |  | |||||||||||||||     
T  11948175 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcc 11948274  T
Q  121 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtc 213  Q
    |||| ||||||||||| |||||||   |||||||||||| ||| ||  ||| |||   ||||||||||||||| |||||||||||||| ||||    
T  11948275 caaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtc 11948367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 14820814 - 14820687
Alignment:
Q  79 ttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgta 178  Q
    ||||||| |||||||||  |||||||| ||||||| ||||| ||| || |||||||||||||| ||  ||||||  |||||| |||||| ||| ||| |     
T  14820814 ttgttcaggagtgaaactacatggaattaactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatg 14820715  T
Q  179 atctcaaagagttgtcgtgggcttttgc 206  Q
    ||||| |||| |||| ||||||||||||    
T  14820714 atctccaagaattgttgtgggcttttgc 14820687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 6423314 - 6423209
Alignment:
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt 202  Q
    |||||||||| |||||| |||  |||||||||||||||||||  |||||||||||   ||| ||| ||| ||||  ||||||||||||||| ||||| ||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggatt 6423215  T
Q  203 ttgcaa 208  Q
    ||||||    
T  6423214 ttgcaa 6423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 7994102 - 7994289
Alignment:
Q  21 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 120  Q
    |||||||| |||  |||||| ||| ||||||||| || || || |||||| |  ||| |||| |||||||||| |  |  ||||||||||||| |||||     
T  7994102 aaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttcc 7994201  T
Q  121 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
     ||  | |||||||||||| ||||  ||||||| ||| |||| |||| ||||||||| |||||||||| ||||  ||| |||||||||    
T  7994202 gaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaa 7994289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 6416068 - 6415958
Alignment:
Q  98 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 197  Q
    ||||||||| |||||| ||||| |||  |||||||||||||||||||  ||||||  ||| ||||| |||  || ||||| |||||||||| |||| | |    
T  6416068 catggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcg 6415969  T
Q  198 ggcttttgcaa 208  Q
    |||||||||||    
T  6415968 ggcttttgcaa 6415958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 7119322 - 7119152
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||||||||| ||| |||| ||| ||||||||  ||   |||||||||||||| |  | ||||||||||||||  |||| | |  |||||||||    
T  7119322 gttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgt 7119223  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 205  Q
    ||||||||||  |||| |  ||||||||||||| |||  |||| ||||| |||| |||| | |||||||||    
T  7119222 tgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttg 7119152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 7131800 - 7131630
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||||||||| ||| |||| ||| ||||||||  ||   |||||||||||||| |  | ||||||||||||||  |||| | |  |||||||||    
T  7131800 gttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgt 7131701  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 205  Q
    ||||||||||  |||| |  ||||||||||||| |||  |||| ||||| |||| |||| | |||||||||    
T  7131700 tgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttg 7131630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 9411456 - 9411347
Alignment:
Q  99 atggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgg 198  Q
    ||||| |||||||||| |||| |||  |||||||||||||||||||  ||||| | |||   ||||||| ||| ||||  |||||||||| |||||||||    
T  9411456 atggattgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtgg 9411357  T
Q  199 gcttttgcaa 208  Q
     |||||||||    
T  9411356 acttttgcaa 9411347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 14818484 - 14818376
Alignment:
Q  98 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 197  Q
    |||||||| ||||||| ||||||||| || |||||||||||||| ||  ||||||  |||||| |||||| ||| ||| | ||||| |||| ||||  ||    
T  14818484 catggaattaactttgcagttctcaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctg 14818385  T
Q  198 ggcttttgc 206  Q
    |||||||||    
T  14818384 ggcttttgc 14818376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 19632511 - 19632431
Alignment:
Q  128 gaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    ||||||||| |||||||| ||||||  |||||||||||  |||| | ||| |||||||||| |||| ||||||||||||||    
T  19632511 gaggtgttggacttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttgcaa 19632431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 14802429 - 14802331
Alignment:
Q  107 aactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 205  Q
    ||||||||||||| |||  |||| |||||||| |||||  ||||||  ||||||||||||| ||| ||||| || ||||||| |||| |||| ||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 10579761 - 10579840
Alignment:
Q  126 tggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 205  Q
    |||||||||||||||||||  |||||| |||||||||| ||| ||| |||   |||||||||| |||| || ||||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttg 10579840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 28935146 - 28935083
Alignment:
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaa 166  Q
    |||||| ||||| |||| | || | ||||||||||||||||| |||||||||||||| ||||||    
T  28935146 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaa 28935083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 6426631 - 6426501
Alignment:
Q  80 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaa 179  Q
    |||||||  |||||||  |||||||||||||||| ||||| | |  ||||||||||||| |||||  | |||||  ||||||||||||   | ||||  |    
T  6426631 tgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcga 6426532  T
Q  180 tctcaaagagttgtcgtgggcttttgcaatt 210  Q
    ||||||||| |||| || || ||||||||||    
T  6426531 tctcaaagaattgttgtcggattttgcaatt 6426501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 6589322 - 6589408
Alignment:
Q  100 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaa 186  Q
    |||||||||||||| ||||| ||   |||||||||||||||||||  ||||||  ||| ||||| ||| ||||||| | ||||||||    
T  6589322 tggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 6589408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 6603230 - 6603306
Alignment:
Q  129 aggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 205  Q
    |||||||| ||||| |  ||||| | ||||||||||||| | | ||||  |||||||||||||||| ||||||||||    
T  6603230 aggtgttggacttggcagatacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttg 6603306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 45245018 - 45245192
Alignment:
Q  34 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 133  Q
    ||||||| ||||||||||||||||||| || || |||||     | ||||||||| || ||   | |||||| |||||||||||||  ||| | ||||||    
T  45245018 tgttttaaggagatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattacgtggaataaactttgaagttccaaaacttgaggtg 45245117  T
Q  134 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    ||||| |||||  | ||||  ||||||||||||| |||  |||| ||||||||||||||||||||||||||||||    
T  45245118 ttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaa 45245192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 1037598 - 1037784
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| |||||||||||||  ||||||| ||||| ||  ||   | ||||||||||||||  | | |||| |||||| ||||||   |||| |||||||    
T  1037598 gttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgt 1037697  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaa 221  Q
    | |||||||| |||||| | ||||||||||||| ||| ||| | |||||||||| |||| |||||||||| ||| ||| ||| ||||    
T  1037698 ttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaa 1037784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 32785773 - 32785876
Alignment:
Q  102 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 201  Q
    ||||||||||| ||| || |||| | ||||||||||||||||| ||||||||| |||||||||||  ||| ||||| |||||||  |||| || ||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 32785872  T
Q  202 tttg 205  Q
    ||||    
T  32785873 tttg 32785876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 52082678 - 52082582
Alignment:
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 199  Q
    |||||||||| |||||  ||||||||||||||||||||||||  | |||| | |||||||||||| | | ||||| ||||||||||||||| |||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 52082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 19468478 - 19468608
Alignment:
Q  80 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaa 179  Q
    |||||||||||||| |  | |||| ||||||||| ||||| |||  ||||||||||||| |||||  ||||||  ||||||||||||| ||| ||||| |    
T  19468478 tgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtga 19468577  T
Q  180 tctcaaagagttgtcgtgggcttttgcaatt 210  Q
    |||||||||  ||| |||| |||||| ||||    
T  19468578 tctcaaagaactgttgtggacttttggaatt 19468608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 52092874 - 52092776
Alignment:
Q  103 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 201  Q
    |||||||||| |||||  |||||||||||||||||||||| |  | |||| | |||||||||| | | | ||||| ||||||||||||| | |||||||    
T  52092874 aatgaactttcaagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggct 52092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 15092085 - 15092258
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||| ||||| |||  ||| ||| |||||||| || || |||| ||| |||||||  |||||||||||||||| ||||| | |  |||||||||    
T  15092085 gttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcccgagctggaggtgt 15092184  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    |||| |||||  | ||||  ||| ||||| ||| ||| ||||  |||||||||| |||| ||||||||||||||    
T  15092185 tgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaa 15092258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 7977757 - 7977615
Alignment:
Q  21 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 120  Q
    |||||||||||   |||||| |||||||||||||||||||||| || ||| |  || |||||||||| ||||| |  | ||||||||| || || |||      
T  7977757 aaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgaatctacgtggaatgaaattcgacgtttg 7977658  T
Q  121 caaattggaggtgttgaacttgtcgcatacaagagttgatgat 163  Q
    |||| | ||||  ||||||||||| ||||||| ||||||||||    
T  7977657 caaactcgaggctttgaacttgtcacatacaacagttgatgat 7977615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 10614758 - 10614585
Alignment:
Q  35 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 134  Q
    |||||| ||| ||||||||| ||||| || ||||||||  ||  ||||  || |||||| |  | |||||||||| |||  |||| |||  |||||||||    
T  10614758 gttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgt 10614659  T
Q  135 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 208  Q
    ||||||||||  |||| |  ||| ||||| ||| ||| ||||| ||||| ||||  ||| ||||||||||||||    
T  10614658 tgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaa 10614585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 603 - 724
Alignment:
Q  80 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaa 179  Q
    ||||||||||||||||  | | |||| |||||| ||||||   |||| |||||||| |||||||| |||||||| || |||||||||| ||| ||| | |    
T  603 tgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatga 702  T
Q  180 tctcaaagagttgtcgtgggct 201  Q
    |||| |||| |||| |||||||    
T  703 tctcgaagaattgttgtgggct 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 39256 - 39177
Alignment:
Q  128 gaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 207  Q
    ||||||||||||||| |   |||||  ||| ||||||||| ||| ||||| ||||||||||||||| |||||||||||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgca 39177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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