View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8314_high_4 (Length: 419)

Name: NF8314_high_4
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8314_high_4
NF8314_high_4
[»] chr3 (3 HSPs)
chr3 (15-419)||(51120228-51120628)
chr3 (112-146)||(51112886-51112920)
chr3 (209-258)||(51112969-51113018)
[»] chr5 (4 HSPs)
chr5 (113-157)||(41886292-41886336)
chr5 (210-265)||(28660967-28661022)
chr5 (117-159)||(41900191-41900233)
chr5 (117-155)||(32268880-32268918)
[»] chr2 (1 HSPs)
chr2 (112-159)||(45244521-45244568)
[»] chr4 (9 HSPs)
chr4 (117-155)||(566754-566792)
chr4 (212-264)||(6007659-6007711)
chr4 (120-155)||(1524000-1524035)
chr4 (112-159)||(1537246-1537293)
chr4 (117-159)||(1488824-1488866)
chr4 (117-158)||(12120920-12120961)
chr4 (123-159)||(554097-554133)
chr4 (103-159)||(645445-645501)
chr4 (204-260)||(1547461-1547517)
[»] chr1 (1 HSPs)
chr1 (103-159)||(9582031-9582087)
[»] chr6 (4 HSPs)
chr6 (112-159)||(9412450-9412497)
chr6 (212-265)||(28935566-28935619)
chr6 (118-158)||(6403935-6403975)
chr6 (118-158)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (117-159)||(17642614-17642656)
[»] chr7 (1 HSPs)
chr7 (117-154)||(10616209-10616246)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 419
Target Start/End: Original strand, 51120228 - 51120628
Alignment:
Q  15 cacgtcaatatgaaaagaaagagaagtaactctctcaaatcttcccaacaacaattgttttcttcttccacaaaaacgacaacaattacagcagcatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51120228 cacgtcaatatgaaaagaaagagaagtaactctctcaaatcttcccaacaacaattgttttcttcttccacaaaaacgacaaccattacagcagcatatt 51120327  T
Q  115 tctatttacctgatgactgttgggaatgtgtcttcaaattcctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120328 tctatttacctgatgactgttgggaatgtgtcttcaaattcctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtc 51120427  T
Q  215 tcgaagcagttcctctctatcaccaaccttctctgattctctctcactatacgtgctccaaagcacttttgtttccttcgtcgtctcttccatagattct 314  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120428 tcgaagcagttcctctctatcaccaaccttctccgattctctctcactatacgtgctccaaagcacttttgtttccttcgtcgtctcttccatagattct 51120527  T
Q  315 ccaaccttaactccctcaacctttcgatatacttactacggtaatgatatcaacttacttctcatccaaatatctcttttcccattgaaacttcgatcac 414  Q
    |||||||||| ||||||||||||||||||    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51120528 ccaaccttaattccctcaacctttcgata----tactatggtaatgatatcaacttacttttcatccaaatatctcttttcccattgaaacttcgatcac 51120623  T
Q  415 tccat 419  Q
    |||||    
T  51120624 tccat 51120628  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 51112886 - 51112920
Alignment:
Q  112 atttctatttacctgatgactgttgggaatgtgtc 146  Q
    |||||||||||||||||||||||||||||| ||||    
T  51112886 atttctatttacctgatgactgttgggaatatgtc 51112920  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 51112969 - 51113018
Alignment:
Q  209 gttgtctcgaagcagttcctctctatcaccaaccttctctgattctctct 258  Q
    ||||||||||| | ||||||||| |||||||||| |||| ||||||||||    
T  51112969 gttgtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 51113018  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 41886292 - 41886336
Alignment:
Q  113 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  41886292 tttctatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 28660967 - 28661022
Alignment:
Q  210 ttgtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactata 265  Q
    ||||||||||||||||||||||||||||||||  ||||  |||||| |||||||||    
T  28660967 ttgtctcgaagcagttcctctctatcaccaacggtctcaaattctcgctcactata 28661022  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 41900191 - 41900233
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctca 41900233  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 32268918 - 32268880
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattc 155  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  32268918 tatttaccagatgagtgttgggaatgtgtcttcaaattc 32268880  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 45244521 - 45244568
Alignment:
Q  112 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctca 45244568  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 566792 - 566754
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattc 155  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  566792 tatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 6007711 - 6007659
Alignment:
Q  212 gtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactat 264  Q
    |||||||| ||||||||||| |||||||||  |||| ||||||||||||||||    
T  6007711 gtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 6007659  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 1524000 - 1524035
Alignment:
Q  120 ttacctgatgactgttgggaatgtgtcttcaaattc 155  Q
    |||||||||||||||||||||| |||||||||||||    
T  1524000 ttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 1537246 - 1537293
Alignment:
Q  112 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||| |||||||||||||| |||||||||||||| |||| ||||||||    
T  1537246 atttatatttacctgatgagtgttgggaatgtgtattcagattcctca 1537293  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 1488824 - 1488866
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||||||||||||| || |||||||||||| ||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctca 1488866  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 12120920 - 12120961
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattcctc 158  Q
    |||||||||||||| ||||||||||||||| ||| |||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcctc 12120961  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 554133 - 554097
Alignment:
Q  123 cctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||||||| |||||||||| |||||||||||||||||    
T  554133 cctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 645501 - 645445
Alignment:
Q  103 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||| ||| |||| ||||||||| |||| ||||||| ||||||||||| ||||||||    
T  645501 cagctgcagatttttatttaccttatgattgttgggtatgtgtcttcagattcctca 645445  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 1547461 - 1547517
Alignment:
Q  204 tatccgttgtctcgaagcagttcctctctatcaccaaccttctctgattctctctca 260  Q
    ||||| ||||||| || || |||||||| |||||||||| |||| ||||||||||||    
T  1547461 tatcccttgtctccaaacaattcctctccatcaccaaccgtctccgattctctctca 1547517  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 9582087 - 9582031
Alignment:
Q  103 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    ||||| || |||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  9582087 cagcaacagatttttatttacctaatgactgttgggaatccgtcttcaaattcctca 9582031  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 9412497 - 9412450
Alignment:
Q  112 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  9412497 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 9412450  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 28935619 - 28935566
Alignment:
Q  212 gtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactata 265  Q
    |||||||| |||||||||||||||||||||  |||| ||||| | |||||||||    
T  28935619 gtctcgaaacagttcctctctatcaccaacagtctccgattcacactcactata 28935566  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 6403975 - 6403935
Alignment:
Q  118 atttacctgatgactgttgggaatgtgtcttcaaattcctc 158  Q
    |||| ||||||||||| |||||||| |||||||||||||||    
T  6403975 atttgcctgatgactgatgggaatgcgtcttcaaattcctc 6403935  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  118 atttacctgatgactgttgggaatgtgtcttcaaattcctc 158  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 17642614 - 17642656
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||||||||||||| |||||||| | |||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctca 17642656  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaatt 154  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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