View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8314_high_9 (Length: 303)
Name: NF8314_high_9
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8314_high_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 39553836 - 39554125
Alignment:
| Q |
14 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
113 |
Q |
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| T |
39553836 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
39553935 |
T |
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| Q |
114 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
213 |
Q |
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| T |
39553936 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
39554035 |
T |
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| Q |
214 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacgatgataattaaaacactataaataatactaataaatttgtagaca |
303 |
Q |
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| T |
39554036 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacaatgataattaaaacactataaataatactaataaatttgtagaca |
39554125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 39543817 - 39544078
Alignment:
| Q |
14 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
113 |
Q |
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| T |
39543817 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggat |
39543916 |
T |
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| Q |
114 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
213 |
Q |
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| T |
39543917 |
caaagacttgttattgttgggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
39544016 |
T |
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| Q |
214 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacgatgataattaaaacact |
275 |
Q |
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| T |
39544017 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacact |
39544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 39586948 - 39587182
Alignment:
| Q |
16 |
gagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatca |
115 |
Q |
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| T |
39586948 |
gagatggggatgtacatgtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatca |
39587047 |
T |
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| Q |
116 |
aagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccac |
215 |
Q |
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| T |
39587048 |
aagacttgttattgctcgatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccac |
39587147 |
T |
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| Q |
216 |
tactaaaccaccacatttcatccaagttgcctgca |
250 |
Q |
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| T |
39587148 |
tactaacccaccacatttcatccaagttgcctgca |
39587182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 253
Target Start/End: Original strand, 17503782 - 17503893
Alignment:
| Q |
142 |
atctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaag |
241 |
Q |
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| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccacactttaatgaag |
17503881 |
T |
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| Q |
242 |
ttgcctgcatag |
253 |
Q |
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| T |
17503882 |
ttgcctgcatag |
17503893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 17475654 - 17475735
Alignment:
| Q |
137 |
gagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactac |
218 |
Q |
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| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactac |
17475735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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