View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8314_low_11 (Length: 266)
Name: NF8314_low_11
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8314_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 52806548 - 52806309
Alignment:
| Q |
8 |
gagaagcagagagaaaacattaaccttagcagtttcagacagaacaatttcatggctgctactagtgttaagcacagttcttctgagtttaactcagttc |
107 |
Q |
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| T |
52806548 |
gagaatcatagagaaaacattaaccttagcagtttcagacagaacaatttcatggctgctactagtgctaagcacagttcttctgagtttaactcagttc |
52806449 |
T |
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| Q |
108 |
tcttttctccaccaaaaagaaccgagttgatgagtacatcaggtggacttggcttgacccttcattcttccaggtgatattttgcttaatcaataacaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806448 |
tcttttctccaccaaaaagaaccgagttgatgagtacatcaggtggacttggcttgacccttcattcttccaggtgatattttgcttaatcaataacaat |
52806349 |
T |
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| Q |
208 |
aatatactaagtacatgtttggattcacagtgagttagacag |
249 |
Q |
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| T |
52806348 |
a--atactaagtacatgtttggattcacagtgagttagacag |
52806309 |
T |
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