View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8314_low_3 (Length: 443)
Name: NF8314_low_3
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8314_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 3109032 - 3109455
Alignment:
| Q |
20 |
aataaataataaacaatgaaacattagggtaaggtaagt----ctgattttttagcatttctcagctgccactgagttttggttctttgtttctctttct |
115 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109032 |
aatatataataaacaatgaaatattagggtaaggtaagtaagtctgattttttagcatttctcagctgccactgagttttggttctttgtttctctttct |
3109131 |
T |
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| Q |
116 |
ctccctttcaattttaatatcaat------ttttcaacataaagtaactattaacattgaatattgttatcaaagtacaagagtgaaagagaaagaaatt |
209 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109132 |
ctccctttcaattttaatatcaatatcaatttttcaacataaagtaactattaacattgaatattgttatcaaagtacaagagtgaaagagaaagaaatt |
3109231 |
T |
|
| Q |
210 |
gttgtgtgc----gtgcgtgtgtgtattcattacacacaattatgtctttctctagcacaataatccgaccacgtatgttgttgggacaaacaacaagat |
305 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109232 |
gttgtgtgcgtgcgtgcgtgtgtgtattcattacacacaattatgtctttctctagcacaataatccgaccacgtatgttgttgggacaaacaacaagat |
3109331 |
T |
|
| Q |
306 |
tcaacaacaatgatgcattcacactctcccacgttgttcaaccacaaccacttgtacgaggttcttgttccttctcactctcaacgacccgccacattgg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3109332 |
tcaacaacaatgatgcattcacactctcccacgttgttcaaccacaaccacttgtacgaggttcttgttccttctcactctcaacgacccgccacattgg |
3109431 |
T |
|
| Q |
406 |
ttttgtttcaaaattcgaccaaac |
429 |
Q |
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|||||||||||||||||||||||| |
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| T |
3109432 |
ttttgtttcaaaattcgaccaaac |
3109455 |
T |
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