View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8314_low_4 (Length: 419)

Name: NF8314_low_4
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8314_low_4
NF8314_low_4
[»] chr3 (3 HSPs)
chr3 (15-419)||(51120228-51120628)
chr3 (112-146)||(51112886-51112920)
chr3 (209-258)||(51112969-51113018)
[»] chr5 (4 HSPs)
chr5 (113-157)||(41886292-41886336)
chr5 (210-265)||(28660967-28661022)
chr5 (117-159)||(41900191-41900233)
chr5 (117-155)||(32268880-32268918)
[»] chr2 (1 HSPs)
chr2 (112-159)||(45244521-45244568)
[»] chr4 (9 HSPs)
chr4 (117-155)||(566754-566792)
chr4 (212-264)||(6007659-6007711)
chr4 (120-155)||(1524000-1524035)
chr4 (112-159)||(1537246-1537293)
chr4 (117-159)||(1488824-1488866)
chr4 (117-158)||(12120920-12120961)
chr4 (123-159)||(554097-554133)
chr4 (103-159)||(645445-645501)
chr4 (204-260)||(1547461-1547517)
[»] chr1 (1 HSPs)
chr1 (103-159)||(9582031-9582087)
[»] chr6 (4 HSPs)
chr6 (112-159)||(9412450-9412497)
chr6 (212-265)||(28935566-28935619)
chr6 (118-158)||(6403935-6403975)
chr6 (118-158)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (117-159)||(17642614-17642656)
[»] chr7 (1 HSPs)
chr7 (117-154)||(10616209-10616246)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 419
Target Start/End: Original strand, 51120228 - 51120628
Alignment:
Q  15 cacgtcaatatgaaaagaaagagaagtaactctctcaaatcttcccaacaacaattgttttcttcttccacaaaaacgacaacaattacagcagcatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51120228 cacgtcaatatgaaaagaaagagaagtaactctctcaaatcttcccaacaacaattgttttcttcttccacaaaaacgacaaccattacagcagcatatt 51120327  T
Q  115 tctatttacctgatgactgttgggaatgtgtcttcaaattcctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120328 tctatttacctgatgactgttgggaatgtgtcttcaaattcctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtc 51120427  T
Q  215 tcgaagcagttcctctctatcaccaaccttctctgattctctctcactatacgtgctccaaagcacttttgtttccttcgtcgtctcttccatagattct 314  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120428 tcgaagcagttcctctctatcaccaaccttctccgattctctctcactatacgtgctccaaagcacttttgtttccttcgtcgtctcttccatagattct 51120527  T
Q  315 ccaaccttaactccctcaacctttcgatatacttactacggtaatgatatcaacttacttctcatccaaatatctcttttcccattgaaacttcgatcac 414  Q
    |||||||||| ||||||||||||||||||    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51120528 ccaaccttaattccctcaacctttcgata----tactatggtaatgatatcaacttacttttcatccaaatatctcttttcccattgaaacttcgatcac 51120623  T
Q  415 tccat 419  Q
    |||||    
T  51120624 tccat 51120628  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 51112886 - 51112920
Alignment:
Q  112 atttctatttacctgatgactgttgggaatgtgtc 146  Q
    |||||||||||||||||||||||||||||| ||||    
T  51112886 atttctatttacctgatgactgttgggaatatgtc 51112920  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 51112969 - 51113018
Alignment:
Q  209 gttgtctcgaagcagttcctctctatcaccaaccttctctgattctctct 258  Q
    ||||||||||| | ||||||||| |||||||||| |||| ||||||||||    
T  51112969 gttgtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 51113018  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 41886292 - 41886336
Alignment:
Q  113 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  41886292 tttctatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 28660967 - 28661022
Alignment:
Q  210 ttgtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactata 265  Q
    ||||||||||||||||||||||||||||||||  ||||  |||||| |||||||||    
T  28660967 ttgtctcgaagcagttcctctctatcaccaacggtctcaaattctcgctcactata 28661022  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 41900191 - 41900233
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctca 41900233  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 32268918 - 32268880
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattc 155  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  32268918 tatttaccagatgagtgttgggaatgtgtcttcaaattc 32268880  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 45244521 - 45244568
Alignment:
Q  112 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctca 45244568  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 566792 - 566754
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattc 155  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  566792 tatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 6007711 - 6007659
Alignment:
Q  212 gtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactat 264  Q
    |||||||| ||||||||||| |||||||||  |||| ||||||||||||||||    
T  6007711 gtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 6007659  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 1524000 - 1524035
Alignment:
Q  120 ttacctgatgactgttgggaatgtgtcttcaaattc 155  Q
    |||||||||||||||||||||| |||||||||||||    
T  1524000 ttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 1537246 - 1537293
Alignment:
Q  112 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||| |||||||||||||| |||||||||||||| |||| ||||||||    
T  1537246 atttatatttacctgatgagtgttgggaatgtgtattcagattcctca 1537293  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 1488824 - 1488866
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||||||||||||| || |||||||||||| ||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctca 1488866  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 12120920 - 12120961
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattcctc 158  Q
    |||||||||||||| ||||||||||||||| ||| |||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcctc 12120961  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 554133 - 554097
Alignment:
Q  123 cctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||||||| |||||||||| |||||||||||||||||    
T  554133 cctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 645501 - 645445
Alignment:
Q  103 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||| ||| |||| ||||||||| |||| ||||||| ||||||||||| ||||||||    
T  645501 cagctgcagatttttatttaccttatgattgttgggtatgtgtcttcagattcctca 645445  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 1547461 - 1547517
Alignment:
Q  204 tatccgttgtctcgaagcagttcctctctatcaccaaccttctctgattctctctca 260  Q
    ||||| ||||||| || || |||||||| |||||||||| |||| ||||||||||||    
T  1547461 tatcccttgtctccaaacaattcctctccatcaccaaccgtctccgattctctctca 1547517  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 9582087 - 9582031
Alignment:
Q  103 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    ||||| || |||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  9582087 cagcaacagatttttatttacctaatgactgttgggaatccgtcttcaaattcctca 9582031  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 9412497 - 9412450
Alignment:
Q  112 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  9412497 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 9412450  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 28935619 - 28935566
Alignment:
Q  212 gtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactata 265  Q
    |||||||| |||||||||||||||||||||  |||| ||||| | |||||||||    
T  28935619 gtctcgaaacagttcctctctatcaccaacagtctccgattcacactcactata 28935566  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 6403975 - 6403935
Alignment:
Q  118 atttacctgatgactgttgggaatgtgtcttcaaattcctc 158  Q
    |||| ||||||||||| |||||||| |||||||||||||||    
T  6403975 atttgcctgatgactgatgggaatgcgtcttcaaattcctc 6403935  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  118 atttacctgatgactgttgggaatgtgtcttcaaattcctc 158  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 17642614 - 17642656
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 159  Q
    |||||||||||||| |||||||| | |||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctca 17642656  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  117 tatttacctgatgactgttgggaatgtgtcttcaaatt 154  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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