View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8314_low_5 (Length: 359)
Name: NF8314_low_5
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8314_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 351
Target Start/End: Complemental strand, 33531399 - 33531072
Alignment:
| Q |
24 |
gcaggttgggagaagcagaaaaggcattgaactgcaataaagaaactccgtactttgattcggaacttgatttccaagctcaggctcttcaagttcactt |
123 |
Q |
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| T |
33531399 |
gcaggttgggagaagcagaaaaggcattgaactgcaataaagaaactccgtactttgattcggaacttgatttccaagctcaggctcttcaagttcactt |
33531300 |
T |
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| Q |
124 |
taacaaatgcagtgaggccaggaaagtcaaggattggaaagttatattgaaggaaacacagtctgcaatatccttaggtgtggattcagctccaaaggtt |
223 |
Q |
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| T |
33531299 |
taacaaatgcagtgaggccaggaaagtcaaggattggaaagttatattgaaggaaacacagtctgcaatatccttaggtgtggattcagctccaaaggtt |
33531200 |
T |
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| Q |
224 |
agtttctttggttaaatgttttattttaggcactcctacannnnnnnnaatcatatgttactcaactcattggccaataaccctcttatgctgattnnnn |
323 |
Q |
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| T |
33531199 |
agtttctttggttaaatgttttattttaggcactcctacattttttttaatcatatgttactcaactcattggccaataaccctcttatgctgattaaaa |
33531100 |
T |
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| Q |
324 |
nnntggttatgtctaccaggtctctgct |
351 |
Q |
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| T |
33531099 |
aaatggttatgtctaccaggtctatgct |
33531072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 26209227 - 26209083
Alignment:
| Q |
89 |
cttgatttccaagctcaggctcttcaagttcactttaacaaatgcagtgaggccaggaaagtcaaggattggaaagttatattgaaggaaacacagtctg |
188 |
Q |
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| T |
26209227 |
cttgcttttcaagctcaggctctacaaaatcacctgaagaaatgcatagaagctaggaaattcaatgaatggagtgttgtactaaaggaaacacagtctg |
26209128 |
T |
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| Q |
189 |
caatatccttaggtgtggattcagctccaaaggttagtttctttg |
233 |
Q |
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| T |
26209127 |
cattatccttaggtgccgattcagctccacaggttagttcctttg |
26209083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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