View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8314_low_6 (Length: 336)

Name: NF8314_low_6
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8314_low_6
NF8314_low_6
[»] chr2 (5 HSPs)
chr2 (3-318)||(2482495-2482811)
chr2 (148-265)||(13557521-13557639)
chr2 (15-64)||(2478325-2478374)
chr2 (3-62)||(2485904-2485963)
chr2 (157-228)||(42444026-42444097)
[»] chr4 (2 HSPs)
chr4 (144-235)||(24676193-24676283)
chr4 (143-203)||(40333247-40333306)
[»] chr1 (5 HSPs)
chr1 (144-235)||(30750140-30750230)
chr1 (144-235)||(30751951-30752041)
chr1 (144-235)||(30771591-30771681)
chr1 (143-259)||(11021739-11021859)
chr1 (146-217)||(27410345-27410416)
[»] scaffold0039 (1 HSPs)
scaffold0039 (143-259)||(102609-102729)
[»] chr8 (3 HSPs)
chr8 (143-261)||(6402402-6402523)
chr8 (143-259)||(33842407-33842526)
chr8 (140-212)||(41902533-41902605)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 3 - 318
Target Start/End: Complemental strand, 2482811 - 2482495
Alignment:
Q  3 ttcattttcatcaattgtgacgtaattctcatgttggattagagcaagtatctttagtttaagaaaaatgctgaaattcacgacaatgtttgctatcaaa 102  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2482811 ttcattttcatcaattgtgacgtaattctcatggtggattagagcaagtatctttagtttaagaaaaatgctgaaattcacgacaatgtttgttatcaaa 2482712  T
Q  103 tttgtactaataagtttataattgctatttagttttctttctaattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaa 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2482711 tttgtactaataagtttataactgctatttagttttctttctaattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaa 2482612  T
Q  203 atcacaaaaacacctcattcggtggtgtttct-caagtcaacttttgtatgtgtcttacctcaccaataattatggaatgtggattatgtgtgctattgc 301  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2482611 atcacaaaaacacctcattcggtggtgtttctccaagtcaacttttgtatttgtcttacctcaccaataattatggaaggtggattatgtgtgctattgc 2482512  T
Q  302 cttggtaacattgttag 318  Q
    |||||||||||||||||    
T  2482511 cttggtaacattgttag 2482495  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 13557521 - 13557639
Alignment:
Q  148 tttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacctcattcggtggtgtttct-caagtcaacttt 246  Q
    ||||| |||||| |||||||||||  |||||||| ||||||     | |||||||||||||||||||||||||| | |||||||||| ||| ||||||||    
T  13557521 tttgacttgacacaaaatgacaaatgttgcctctgctggatgcaactcatgagaaatcacaaaaacacctcattggatggtgtttctccaaatcaacttt 13557620  T
Q  247 tgtatgtgtcttacctcac 265  Q
    |||||||||||||||||||    
T  13557621 tgtatgtgtcttacctcac 13557639  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 2478374 - 2478325
Alignment:
Q  15 aattgtgacgtaattctcatgttggattagagcaagtatctttagtttaa 64  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  2478374 aattgtgacgtaattctcatggtggattagagcaagtatctttggtttaa 2478325  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 2485963 - 2485904
Alignment:
Q  3 ttcattttcatcaattgtgacgtaattctcatgttggattagagcaagtatctttagttt 62  Q
    |||||||||||||||| | |||||||||||||| |||||||| | |||||||||| ||||    
T  2485963 ttcattttcatcaattttaacgtaattctcatggtggattagggtaagtatctttggttt 2485904  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 42444026 - 42444097
Alignment:
Q  157 acagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacctcattcggtggt 228  Q
    |||||||||||||||  |||||||| ||| |||||||  ||||||||||| | ||||| |||||||||||||    
T  42444026 acagaaaatgacaaatcttgcctctgctgtatattttctatgagaaatcatacaaacatctcattcggtggt 42444097  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 24676283 - 24676193
Alignment:
Q  144 taattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacctcattcggtggtgtttctc 235  Q
    ||||||| |||||||| ||| ||||||| |||||||||||| ||||| | | |||| |||||||||||| |||||||| ||||||| |||||    
T  24676283 taattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacctcatt-ggtggtgcttctc 24676193  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 40333306 - 40333247
Alignment:
Q  143 ctaattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaa 203  Q
    |||||||||||||||||  |||||||||| |||||||| |||| |||||| | ||||||||    
T  40333306 ctaattttgatttgaca-caaatgacaaattttgcctcctctgtatatttcttatgagaaa 40333247  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 30750140 - 30750230
Alignment:
Q  144 taattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacctcattcggtggtgtttctc 235  Q
    ||||||| |||||||| ||| ||||||| |||||||||||| ||||| | | |||| |||||||||||| |||||||| ||||||| |||||    
T  30750140 taattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacctcatt-ggtggtgcttctc 30750230  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 30751951 - 30752041
Alignment:
Q  144 taattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacctcattcggtggtgtttctc 235  Q
    ||||||| |||||||| ||| ||||||| |||||||||||| ||||| | | |||| |||||||||||| |||||||| ||||||| |||||    
T  30751951 taattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacctcatt-ggtggtgcttctc 30752041  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 30771591 - 30771681
Alignment:
Q  144 taattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacctcattcggtggtgtttctc 235  Q
    ||||||| |||||||| ||| ||||||| |||||||||||| ||||| | | |||| |||||||||||| |||||||| ||||||| |||||    
T  30771591 taattttaatttgacacaaagtgacaaactttgcctcttctagatatatcttatgataaatcacaaaaatacctcatt-ggtggtgcttctc 30771681  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 11021859 - 11021739
Alignment:
Q  143 ctaattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcaca---aaaacacctcattcggtggtgtttct-caag 238  Q
    |||||||| ||||  || |||||||||||  |||||||| |||||| ||| | |||||||||||||   ||||||||||||||  || || |||| |||     
T  11021859 ctaatttttattttgcacaaaatgacaaatcttgcctctgctggatctttctcatgagaaatcacaaaaaaaacacctcattcaatgatggttctccaaa 11021760  T
Q  239 tcaacttttgtatgtgtctta 259  Q
    |||||||||||||||||||||    
T  11021759 tcaacttttgtatgtgtctta 11021739  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 27410345 - 27410416
Alignment:
Q  146 attttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaacacct 217  Q
    |||||||||||||| |||||||||||  |||||||  |||||||||| | || |||||| ||||||||||||    
T  27410345 attttgatttgacacaaaatgacaaatgttgcctcagctggatatttgttatcagaaataacaaaaacacct 27410416  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 102609 - 102729
Alignment:
Q  143 ctaattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcac---aaaaacacctcattcggtggtgtttct-caag 238  Q
    |||||||| ||||  || |||||||||||  |||||||| |||||| ||| | ||||||||||||   |||||||||||||||  || || |||| |||     
T  102609 ctaatttttattttgcacaaaatgacaaatcttgcctctgctggatctttctcatgagaaatcacaaaaaaaacacctcattcaatgatggttctccaaa 102708  T
Q  239 tcaacttttgtatgtgtctta 259  Q
    |||||||||||||||||||||    
T  102709 tcaacttttgtatgtgtctta 102729  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 6402402 - 6402523
Alignment:
Q  143 ctaattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcac--aaaaacacctcattcggtggtgtttct-caagt 239  Q
    |||||||| ||||  || |||||||||||  |||||||| |||||| ||| | ||||||||||||  |||||||||||||||  || || |||| ||| |    
T  6402402 ctaatttttattttgcacaaaatgacaaatcttgcctctgctggatctttctcatgagaaatcacaaaaaaacacctcattcaatgatggttctccaaat 6402501  T
Q  240 caacttttgtatgtgtcttacc 261  Q
    ||||||||| ||||||||||||    
T  6402502 caacttttgcatgtgtcttacc 6402523  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 33842526 - 33842407
Alignment:
Q  143 ctaattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcaca--aaaacacctcattcggtggtgtttct-caagt 239  Q
    |||||||| ||||  || |||||||||||  ||| |||| |||||| ||| | |||| ||||||||  ||||||||||||||  || || |||| ||| |    
T  33842526 ctaatttttattttgcacaaaatgacaaatcttgtctctgctggatctttctcatgaaaaatcacaaaaaaacacctcattcaatgatggttctccaaat 33842427  T
Q  240 caacttttgtatgtgtctta 259  Q
    ||||||||||||||||||||    
T  33842426 caacttttgtatgtgtctta 33842407  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 41902533 - 41902605
Alignment:
Q  140 tttctaattttgatttgacagaaaatgacaaagtttgcctcttctggatatttttgatgagaaatcacaaaaa 212  Q
    ||||||||||| ||||  || |||||||||||  |||||||| |||||| ||| | ||| |||||||||||||    
T  41902533 tttctaatttttattttgcacaaaatgacaaatcttgcctctactggatctttctcatgtgaaatcacaaaaa 41902605  T

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