View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8314_low_8 (Length: 320)
Name: NF8314_low_8
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8314_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 15835518 - 15835208
Alignment:
| Q |
1 |
attttcgaaaaagatttgcatcttgttcacatcttttgttcaattttgctcttgtttttgtatcatgttcccaagtgtttttgttcaactcttcttttta |
100 |
Q |
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| T |
15835518 |
attttggaaaaagatttgcatcttgttcacatcttttgttcaattttgctctagtttttgtatcatgatccca-gtgtttttgttcaactcttcttttta |
15835420 |
T |
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| Q |
101 |
acatctcaaatgtcgttaatatttcggaagaacaaatcaaactggtaagtttttactttatataacttctgatttgctctcagattttaattccattcca |
200 |
Q |
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| T |
15835419 |
acatctcacatgtctttaatatttcggaagaacaaatcaaactggtaagtttt-actttatataacttctgatttgctctcagattataattccattcca |
15835321 |
T |
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| Q |
201 |
ttttaatgataattttgtattgatataatctaaacatgtaacttcc----ggatttagaattcaaaggtacgtaaacttcttgtatttgattttgaagtc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835320 |
ttttaatgataattttgtattgatataatctaaacatgtaacttccttttggatttagaattcaaaggtacgtaaacttcttgtatttgattttgaagtc |
15835221 |
T |
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| Q |
297 |
tttggtgtgatga |
309 |
Q |
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| T |
15835220 |
tttggtgtgatga |
15835208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 41370373 - 41370435
Alignment:
| Q |
247 |
ggatttagaattcaaaggtacgtaaacttcttgtatttgattttgaagtctttggtgtgatga |
309 |
Q |
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| T |
41370373 |
ggatttagaattcaaaggtagggcaacttcatgtatttgattttgaagtctatggtgtgatga |
41370435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20139939 - 20139876
Alignment:
| Q |
1 |
attttcgaaaaagatttgcatcttgttcacatcttttgttcaattttgctcttgtttttgtatc |
64 |
Q |
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| T |
20139939 |
atttccgaacaagattcgcatcttgttcacatcttctgttcaattttgctcttgtttttgtatc |
20139876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 24692375 - 24692316
Alignment:
| Q |
247 |
ggatttagaattcaaaggtacgtaaacttcttgtatttgattttgaagtctttggtgtga |
306 |
Q |
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| T |
24692375 |
ggatttagaattcaaaagtacgccaacttcttgtatttgattttgaagtctatggtgtga |
24692316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 24479786 - 24479848
Alignment:
| Q |
247 |
ggatttagaattcaaaggtacgtaaacttcttgtatttgattttgaagtctttggtgtgatga |
309 |
Q |
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|||||||||||||||||| ||| |||||| ||||||||||||||| |||| ||||| ||||| |
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| T |
24479786 |
ggatttagaattcaaaggcacgacaacttcatgtatttgattttgacgtctatggtgggatga |
24479848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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