View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8314_low_9 (Length: 313)
Name: NF8314_low_9
Description: NF8314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8314_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 1959156 - 1958862
Alignment:
| Q |
1 |
ataacaaatgacattaatccatttagaaagaaagagaaaagtggcagtggcagtggccgtgtgaaggataacacaagccatgacaaaataaatacacaaa |
100 |
Q |
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| T |
1959156 |
ataacaaatgacattaatccatttagaaagaaagagaaaagtggcagtggcagtggccgtgtgaaggataacacaagccatgacaaaataaatacacaaa |
1959057 |
T |
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| Q |
101 |
gaaaatgtgagaaagaatgtgtgtatgtgtgtgaagataaatttaaaatatatgttgatacttttctcatatttattatactagtacaaatttaaggtta |
200 |
Q |
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| T |
1959056 |
gaaaatgtgagaaagaatgtgtgtatgtgtgtgaagataaatttaaaatatatgttgatacttttctcatatttattatactagtacaaatttaaggtta |
1958957 |
T |
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| Q |
201 |
tgttatgtcactttctattgccttttatttgtaaacattatctttctgctattgttgatagctttttcttgttgcagcttttttacatttaaggt |
295 |
Q |
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| T |
1958956 |
tgttatgtcactttctattgccttttatgtgtacacattatctttctgctattgttgatagcttttccttgttgcagcttttttacatttaaggt |
1958862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 179 - 295
Target Start/End: Original strand, 2024574 - 2024694
Alignment:
| Q |
179 |
tactagtacaaatttaaggttatgttatgtcactttctattgccttttatt----tgtaaacattatctttctgctattgttgatagctttttcttgttg |
274 |
Q |
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| T |
2024574 |
tactagtacaaatttaaggttactgtatgtcactttctattgccttctattaatttgtacacattatctttctgctattgttgatagctttttcttgttg |
2024673 |
T |
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| Q |
275 |
cagcttttttacatttaaggt |
295 |
Q |
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| T |
2024674 |
cagcttttttacatttaaggt |
2024694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 2024386 - 2024493
Alignment:
| Q |
5 |
caaatgacattaatccatttagaaagaaagagaaaagtggcagtggcagtggccgtgtgaaggataacacaagccatgacaaaataaatacac--aaaga |
102 |
Q |
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| T |
2024386 |
caaatgacattaatccattaagaaagaaagaaagaaatggaagtggg------cgtgtgaagga-agcacaaactatgacaaaataaatacacaaaaaga |
2024478 |
T |
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| Q |
103 |
aaatgtgagaaagaa |
117 |
Q |
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|||| |||||||||| |
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| T |
2024479 |
aaatatgagaaagaa |
2024493 |
T |
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