View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8315_high_2 (Length: 418)
Name: NF8315_high_2
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8315_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 20272865 - 20272667
Alignment:
| Q |
10 |
tcatagagcaaaagatttataattggtttgnnnnnnngtttccttctctatttaattttctcgagttctctttcgtcataacttattattagttgataag |
109 |
Q |
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| T |
20272865 |
tcatagagcaaaagatttataattggtttgtttttt-gtttccttctctatttaattttctcgagttctctttcggcataacttattattagttgataag |
20272767 |
T |
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| Q |
110 |
ttactactctgttcggcaaacagaaaaaatgtacatttaccccacttgaatttttcttatgaaactttaaataaatcttttggtacatctggaaatgcta |
209 |
Q |
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| T |
20272766 |
ttactactctcttgggcaaacagaaaaaatgtacatttaccccacttgaatttttcttatgaaactttaaataaatcttttggtacatctggaaatgcta |
20272667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 52116182 - 52116218
Alignment:
| Q |
296 |
ctctcggattccaacatcattcataaaagagacaaga |
332 |
Q |
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| T |
52116182 |
ctctcggattccaacaccattcatagaagagacaaga |
52116218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 47476644 - 47476610
Alignment:
| Q |
298 |
ctcggattccaacatcattcataaaagagacaaga |
332 |
Q |
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| T |
47476644 |
ctcggattccaacatcattcataaaaaagacaaga |
47476610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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