View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8315_high_4 (Length: 357)

Name: NF8315_high_4
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8315_high_4
NF8315_high_4
[»] chr8 (2 HSPs)
chr8 (98-342)||(1487978-1488223)
chr8 (1-68)||(1488253-1488320)
[»] chr3 (3 HSPs)
chr3 (98-234)||(50306121-50306261)
chr3 (266-342)||(50306044-50306120)
chr3 (1-68)||(50306291-50306358)
[»] chr2 (3 HSPs)
chr2 (98-234)||(26021509-26021649)
chr2 (266-342)||(26021432-26021508)
chr2 (1-68)||(26021679-26021746)
[»] chr1 (5 HSPs)
chr1 (98-234)||(3788745-3788885)
chr1 (266-342)||(3788886-3788962)
chr1 (1-68)||(3788648-3788715)
chr1 (198-256)||(51050827-51050884)
chr1 (124-168)||(37689707-37689751)
[»] chr4 (1 HSPs)
chr4 (108-256)||(28123872-28124021)
[»] chr6 (1 HSPs)
chr6 (198-256)||(23593601-23593659)
[»] chr5 (1 HSPs)
chr5 (111-168)||(30003342-30003400)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 98 - 342
Target Start/End: Complemental strand, 1488223 - 1487978
Alignment:
Q  98 gattcaaaccaattcttcacgtgttgcaattaagaagcatgtttttt--atggaaccaattattaaaaacaatttcatgaattgtaatttnnnnnnngtt 195  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||       |||    
T  1488223 gattcaaaccaataattcacgtgttgcaattaagaagcatgttttttttatggaaccaattattaaaaacaatttcatgagttgtaatttaaaaaaagtt 1488124  T
Q  196 agaaaaaacaatctttatagcttcaaacaaaggagcccaaatccattgtttatgtttgtttcggtaccattgacagttttcaatgaacttcaaattgcaa 295  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  1488123 agaaaaaacaatctttatagcttcaaacaaaggtgcccaaatccattgtttatgtttgtttcggtacca-tgaaagttttcaatgaacttcaaattgcaa 1488025  T
Q  296 tggctcttgaacgaggttgctctcgaaaatttcttatgcttgtaact 342  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||    
T  1488024 tggctcttgaacgagattgctcttggaaatttcttatgcttgtaact 1487978  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1488320 - 1488253
Alignment:
Q  1 accatcaacactagcatatcatccaccatgaaactacaatccattttcatcttcatcatgttgttttt 68  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1488320 accatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt 1488253  T

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Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 50306261 - 50306121
Alignment:
Q  98 gattcaaaccaattcttcacgtgttgcaattaagaagcatgtttttt--atggaaccaattattaaaaacaatttcatgaattgtaattt--nnnnnnng 193  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||         |    
T  50306261 gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaatttcatgagttgtaatttaaaaaaaaag 50306162  T
Q  194 ttagaaaaaacaatctttatagcttcaaacaaaggagccca 234  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  50306161 ttagaaaaaacaatctttatagcttcaaacaaaggtgccca 50306121  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 50306120 - 50306044
Alignment:
Q  266 tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctctcgaaaatttcttatgcttgtaact 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  50306120 tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctcttggaaatttcttatgcttgtaact 50306044  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 50306358 - 50306291
Alignment:
Q  1 accatcaacactagcatatcatccaccatgaaactacaatccattttcatcttcatcatgttgttttt 68  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50306358 accatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt 50306291  T

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Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 26021649 - 26021509
Alignment:
Q  98 gattcaaaccaattcttcacgtgttgcaattaagaagcatgtttttt--atggaaccaattattaaaaacaatttcatgaattgtaattt--nnnnnnng 193  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||         |    
T  26021649 gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaatttcatgagttgtaatttaaaaaaaaag 26021550  T
Q  194 ttagaaaaaacaatctttatagcttcaaacaaaggagccca 234  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  26021549 ttagaaaaaacaatctttatagcttcaaacaaaggtgccca 26021509  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 26021508 - 26021432
Alignment:
Q  266 tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctctcgaaaatttcttatgcttgtaact 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  26021508 tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctcttggaaatttcttatgcttgtaact 26021432  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 26021746 - 26021679
Alignment:
Q  1 accatcaacactagcatatcatccaccatgaaactacaatccattttcatcttcatcatgttgttttt 68  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  26021746 accatcaacactagcatctcatccatcatgaaactacaatccattttcatcttcaccatgttgttttt 26021679  T

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Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 3788745 - 3788885
Alignment:
Q  98 gattcaaaccaattcttcacgtgttgcaattaagaagcatg--ttttttatggaaccaattattaaaaacaatttcatgaattgtaattt--nnnnnnng 193  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||         |    
T  3788745 gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaatttcatgagttgtaatttaaaaaaaaag 3788844  T
Q  194 ttagaaaaaacaatctttatagcttcaaacaaaggagccca 234  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  3788845 ttagaaaaaacaatctttatagcttcaaacaaaggtgccca 3788885  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 3788886 - 3788962
Alignment:
Q  266 tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctctcgaaaatttcttatgcttgtaact 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  3788886 tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctcttggaaatttcttatgcttgtaact 3788962  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3788648 - 3788715
Alignment:
Q  1 accatcaacactagcatatcatccaccatgaaactacaatccattttcatcttcatcatgttgttttt 68  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3788648 accatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt 3788715  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 51050827 - 51050884
Alignment:
Q  198 aaaaaacaatctttatagcttcaaacaaaggagcccaaatccattgtttatgtttgttt 256  Q
    ||||| ||||||| |||||||||| ||||||| || ||||||||||||| |||||||||    
T  51050827 aaaaatcaatcttcatagcttcaatcaaaggaacctaaatccattgttt-tgtttgttt 51050884  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 37689751 - 37689707
Alignment:
Q  124 caattaagaagcatgttttttatggaaccaattattaaaaacaat 168  Q
    |||||||||| |||| ||||||||||||||||||| |||| ||||    
T  37689751 caattaagaaacatgctttttatggaaccaattatcaaaatcaat 37689707  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 256
Target Start/End: Complemental strand, 28124021 - 28123872
Alignment:
Q  108 aattcttcacgtgttgcaattaagaagcatgttttttatggaaccaattattaaaaa-caat-ttcatgaattgtaatttnnnnnnngttagaaaaaaca 205  Q
    |||||||||||||||||||||||||| || | |||||||||| ||||||| |||||| |||| ||||||| ||| ||| |         |  ||||| ||    
T  28124021 aattcttcacgtgttgcaattaagaaacaagctttttatggacccaattaataaaaagcaatcttcatgagttggaatctaaaaaaaaat-taaaaatca 28123923  T
Q  206 atctttatagcttcaaacaaaggagcccaaatccattgtttatgtttgttt 256  Q
    |||||  ||||||||| ||||||| || |||||||||||||||||||||||    
T  28123922 atcttcttagcttcaatcaaaggaacctaaatccattgtttatgtttgttt 28123872  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 23593659 - 23593601
Alignment:
Q  198 aaaaaacaatctttatagcttcaaacaaaggagcccaaatccattgtttatgtttgttt 256  Q
    ||||| ||||||| |||||||||| ||||||| || |||||||||||||| ||||||||    
T  23593659 aaaaatcaatcttcatagcttcaatcaaaggaacctaaatccattgtttacgtttgttt 23593601  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 30003400 - 30003342
Alignment:
Q  111 tcttcacgtg-ttgcaattaagaagcatgttttttatggaaccaattattaaaaacaat 168  Q
    |||||||||| || |||||||||| |||| ||||||||||||||||||| |||| ||||    
T  30003400 tcttcacgtgcttacaattaagaaacatgctttttatggaaccaattatcaaaatcaat 30003342  T

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