View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8315_low_1 (Length: 628)
Name: NF8315_low_1
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8315_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 19 - 613
Target Start/End: Complemental strand, 32084500 - 32083904
Alignment:
| Q |
19 |
tatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccattaggctttgaacttgatgtgaacctgaattttatcacacataattac |
118 |
Q |
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| T |
32084500 |
tatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccattaggctttgaacttgatgtgaacctgaattttatcagacataattac |
32084401 |
T |
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| Q |
119 |
aattgttatgtggttactctaaaggttttagatatgattatatgatgattgtgcaagcaaggttggttatgaaaacattttatgctatgttgtgtgtttg |
218 |
Q |
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| T |
32084400 |
aattgttatgtggttactctaaaggttttaaatatgattatatgatgattgtgcaagcaagattggttatgaaaacattttatgctatgttgtgtgtttg |
32084301 |
T |
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| Q |
219 |
tcctgatggtgtgcattttgagaagttttgtgattcaagtcaaaatcgaatataaattgctgtgattaaagttttgagttgactttaagggatgtcatat |
318 |
Q |
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| T |
32084300 |
tcctgatggtgtgcattttgagaagttttgtgattcaagtcaaaatcaaatataaattattgtgattaaagttttgagttgactttaagggatgtcatat |
32084201 |
T |
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| Q |
319 |
tttaatcagatagtttgtttttcattatagcgagtttttaaatcgttacatttttagagattctagaatgagaatggtttgagaaagaaagttt--gcgt |
416 |
Q |
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| T |
32084200 |
tttaatcagatagtttgtttttcattatagtgagtttttaaatcgttacatttttagagattctagaatgagaatgttttgagaaagaaagtttacgcgt |
32084101 |
T |
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| Q |
417 |
gagtagattttttacgagggacgagatagttttaaaatatagggacaattaaaattttcagagaagtagagtagatctttttcaacaacgtatgccttaa |
516 |
Q |
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| T |
32084100 |
gagtagattttttacgagggacgagatagttttaaaacatggggacaattaaaattttcagagaagtagagtagatctttttcaacaatgtatgccttaa |
32084001 |
T |
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| Q |
517 |
acagcagagaatagggtcgagtttatagtaagattaccacacaaggctcgtaaaataaaattaaaattaaatatctttcttcagtcgcgccaccacc |
613 |
Q |
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| T |
32084000 |
accgcagcgaatagggtcgagtttatagtaagattaccacataaggctcgtaaaataaaattaaaatttaacatctttcttcagtcgcgccaccacc |
32083904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 32085947 - 32085758
Alignment:
| Q |
21 |
tgtaacatccctggtcatttgctctaactagtcttagcatctttagtccattaggctttgaacttgatgtgaacctgaatttta-----tcacacataat |
115 |
Q |
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||||||||||||| | ||| |||||| |||||||||| ||| ||||||||||||||| ||| ||| ||||||||||||||||| || || |||| |
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| T |
32085947 |
tgtaacatccctgattattagctctagctagtcttagtatcgttagtccattaggctaagaatttgttgtgaacctgaattttatatgttctgacttaat |
32085848 |
T |
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| Q |
116 |
tacaattgttatgtggttactctaaaggttt--tagatatgattatatgatgattgtgcaagcaaggttggttatgaaaacattttatgc |
203 |
Q |
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| T |
32085847 |
tataattgttgtgtggttactcttaaagtatgaaatatatgattatatgattattgtgcaggcatgattgattatggaaatattttatgc |
32085758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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