View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8315_low_10 (Length: 276)
Name: NF8315_low_10
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8315_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 35 - 265
Target Start/End: Original strand, 6412961 - 6413190
Alignment:
| Q |
35 |
actcacattcaataaacgagtttgggtttgaactattatcatatcgtcggatctagtaaataccaaaatttggaagaaaaattattaattcatttcccca |
134 |
Q |
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| T |
6412961 |
actcacatacgataaacaagtttgggtttgaaccattatcatatcgtccgatctagtaaataccaaaatttggaagaaaaattattaattcatt-cccca |
6413059 |
T |
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| Q |
135 |
aaagaaaattcccttactaaccccaaattaaataataatatgaactggaatatactaaaaaataggtgtcacactcttcattgtaatttccctctactcc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413060 |
aaagaaaattcccttactaaccccaaattaaataataatatgaactggaatatactaaaaaataggtgtcacactcttcattgtaatttccctctactcc |
6413159 |
T |
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| Q |
235 |
tttctttcttaaccgtcctcgccacgttcat |
265 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6413160 |
tttctttcttaaccgtcctcgccacgttcat |
6413190 |
T |
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