View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8315_low_11 (Length: 249)
Name: NF8315_low_11
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8315_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 47726873 - 47726730
Alignment:
| Q |
14 |
atcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgtttgaagtggttt |
113 |
Q |
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| T |
47726873 |
atcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgtttgaagtggttt |
47726774 |
T |
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| Q |
114 |
tgttggcgaacacttgcaataataatcagtcatagaaaacttgc |
157 |
Q |
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| T |
47726773 |
tgttggcgaacacttacaataataatcagtcatagaaaacttgc |
47726730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 47748179 - 47748036
Alignment:
| Q |
14 |
atcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgtttgaagtggttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47748179 |
atcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgtttgaagtggttt |
47748080 |
T |
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| Q |
114 |
tgttggcgaacacttgcaataataatcagtcatagaaaacttgc |
157 |
Q |
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| T |
47748079 |
tgttggcgaacacttacaataataatcagtcatagaaaacttgc |
47748036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 47719881 - 47719794
Alignment:
| Q |
14 |
atcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47719881 |
atcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgt |
47719794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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