View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8315_low_2 (Length: 473)
Name: NF8315_low_2
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8315_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 84 - 456
Target Start/End: Complemental strand, 4516929 - 4516557
Alignment:
| Q |
84 |
ccatctccattgcattaacattggaagaaaaatatgattgtgttgttcctaacatcatttgagaagaatttccagttgataaagacaacattggtggtaa |
183 |
Q |
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| T |
4516929 |
ccatctccattgcattaacatttgaagaaaaatatgattgtgttgttcctaacatcatttgagaagaatttccagttgataaagacaacattggtggcaa |
4516830 |
T |
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| Q |
184 |
agatgtaataaagccattgtttcccaattgagaagaattttcagcattagtggaagtacctccccattggtaattcgtaccaagtggcatattgtttaat |
283 |
Q |
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| T |
4516829 |
agatgtaataaagccattgtttcccaattgagaagaattttcagcatcattggaagtacctccccattggtaattcgtaccaagtggcatattgtttaat |
4516730 |
T |
|
| Q |
284 |
aaaccaagaaatgaagggtgatttggtctttgtaacatattgctattatttggaaaaacagttgcagtaggaacttcaatattgcttccttgcttgttaa |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4516729 |
aaaccaagaaatgaagggtgatttggtctttgtaacatattgttattatttggaaaaacagttgcagtaggaacttcaatattgcttccttgcttgttaa |
4516630 |
T |
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| Q |
384 |
tattttcctcttcttgagtactatttatcaagtaatttggtttatcattaaccaattcccttgatacttcttt |
456 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4516629 |
tattttcctcttcttgagtactattcatcaagtaatttggtttatcattaaccaattcccttgatacttcttt |
4516557 |
T |
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